plot_clr_vs_diet: Render line plot of a given CLR taxon against diet PC1 for a...

In kimberlyroche/rulesoflife:

Render line plot of a given CLR taxon against diet PC1 for a given host. This plot is meant to demonstrate the largely uncorrelated nature of the diet data with the observed logratio abundances.

Description

Render line plot of a given CLR taxon against diet PC1 for a given host. This plot is meant to demonstrate the largely uncorrelated nature of the diet data with the observed logratio abundances.

Usage

plot_clr_vs_diet(sname, tax_idx, counts, metadata)

Arguments

sname	host short name indicating which baboon's series to fit
tax_idx	symmetric matrix object
counts	filtered 16S count table (taxa x samples)
metadata	annotations data.frame

kimberlyroche/rulesoflife documentation built on May 7, 2023, 11:08 a.m.