plot_aligned_trajectories | R Documentation |
Render date-aligned trajectories for a pair of taxa and a given set of hosts. This allows us to eyeball whether taxa strongly correlated within hosts show similar dynamics across hosts.
plot_aligned_trajectories(
output_dir,
tax_idx1,
tax_idx2,
tax_label1,
tax_label2,
metadata,
bind_taxa = FALSE,
return_plot = FALSE,
file_tag = NULL
)
output_dir |
specifies the subdirectory of the model fits directory in which to save the predictions |
tax_idx1 |
index of first taxon |
tax_idx2 |
index of second taxon |
tax_label1 |
readable label for first taxon |
tax_label2 |
readable label for second taxon |
metadata |
metadata data.frame (with sname and collection_date column) |
bind_taxa |
plot all trajectories for taxon 1 together; ditto taxon 2 |
return_plot |
if TRUE, returns the ggplot2 object instead of saving it |
file_tag |
if not NULL, a tag to append to the saved filename |
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