plot_enrichment_old: Plot relative representation of ASV pairs (using family...
In kimberlyroche/rulesoflife:

plot_enrichment_old

R Documentation

Plot relative representation of ASV pairs (using family labels)

Description

Plot relative representation of ASV pairs (using family labels)

Usage

plot_enrichment_old(
  frequencies_subset1,
  frequencies_subset2 = NULL,
  frequencies,
  significant_families1,
  significant_families2 = NULL,
  plot_height,
  plot_width,
  legend_topmargin,
  use_pairs = TRUE,
  rel_widths = c(1, 0.35, 1, 0, 4.5),
  labels = NULL,
  palette = NULL,
  save_name = NULL,
  suppress_y = FALSE
)

Arguments

`frequencies_subset1`	table of ASVs or ASV pairs (labeled as "Family - Family") and their frequency in some subset of case of interest
`frequencies_subset2`	an optional second set of frequencies for another subset
`frequencies`	table of ASV pairs (labeled as "Family - Family") and their pverall frequency
`significant_families1`	labels associated with significant families in subset 1; only these families will be colored on the plot
`significant_families2`	optional labels for coloring families in subset 2
`plot_height`	plot height in inches
`plot_width`	plot width in inches
`legend_topmargin`	top margin of legend in points
`use_pairs`	if TRUE, renders relative abundances of pairs of taxa, otherwise, renders families
`rel_widths`	relative width of frequencies, frequencies_subset1, (optionally) frequencies_subset2, the legend, and a spacer between each of these elements
`labels`	optional labels for each set of frequencies
`save_name`	if NULL, ggplot object is returned