Edges_Diseases_obj: get Edges dataframe for Gene/Disease association from...

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

get Edges dataframe for Gene/Disease association from geNetClassifier

Description

get Edges dataframe for Gene/Disease association from geNetClassifier

Usage

Edges_Diseases_obj(genesclassdetails)

Arguments

genesclassdetails

a dataframe from geNetClassifier

Value

A data frame with egdes attributes

Examples

GenesClassDetails <- structure(list(Genes = c("FANCF", "MLH1", "MSH2", "ATR", "PARP1",
"CHEK2", "RAD51"), ranking = c(1L, 1L, 1L, 2L, 3L, 1L, 2L), class = c("brca_tcga",
"gbm_tcga", "lihc_tcga", "lihc_tcga", "lihc_tcga", "lusc_tcga",
"lusc_tcga"), postProb = c(1, 0.99, 1, 0.99, 0.99, 1,
0.98), exprsMeanDiff = c(180, 256, -373, -268,
-1482, 258, 143), exprsUpDw = c("UP", "UP", "DOWN",
"DOWN", "DOWN", "UP", "UP")), .Names = c("Genes", "ranking",
"class", "postProb", "exprsMeanDiff", "exprsUpDw"),
class = "data.frame", row.names = c(NA,-7L))

Ed_Diseases_obj <- Edges_Diseases_obj(genesclassdetails=GenesClassDetails)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.