Node_obj_Met_ProfData: Attribute gene Methylation to Nodes

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Attribute gene Methylation to Nodes

Description

Attribute gene Methylation to Nodes

Usage

Node_obj_Met_ProfData(list, type, threshold)

Arguments

list	a list of data frame with methylation data
type	HM450 or HM27
threshold	the Rate cases (patients) that have a silencing genes by methylation

Value

a data frame with node shape attributes

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.