getList_GenProfs: get list of genetic profiles of each selected study in...
In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis
View source: R/geNetClassifier.R
getList_GenProfs R Documentation
get list of genetic profiles of each selected study in Classifier panel
Description
get list of genetic profiles of each selected study in Classifier panel
Usage
getList_GenProfs(checked_Studies)
Arguments
checked_Studies
checked studies
Value
A list of genetics profiles
Examples
cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run:
getDataByGenes( api = cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)
## End(Not run)
kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.
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View source: R/geNetClassifier.R
| getList_GenProfs | R Documentation |
get list of genetic profiles of each selected study in Classifier panel
Description
get list of genetic profiles of each selected study in Classifier panel
Usage
getList_GenProfs(checked_Studies)
Arguments
checked_Studies |
checked studies |
Value
A list of genetics profiles
Examples
cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run:
getDataByGenes( api = cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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