checkDimensions: Check wich Cases and genetic profiles are available for...

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Check wich Cases and genetic profiles are available for selected study

Description

Check wich Cases and genetic profiles are available for selected study

Usage

checkDimensions(StudyID)

Arguments

StudyID

Study reference using cBioPortal index

Value

A data frame with two column (Cases, Genetic profiles). Every row has a dimension (CNA, mRNA...). The data frame is filled with yes/no response.

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.