getGenesClassification: get genes classification

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

get genes classification

Description

get genes classification

Usage

getGenesClassification(checked_Studies, GeneList,
 samplesize, threshold, listGenProfs, listCases)

Arguments

checked_Studies	checked studies
GeneList	gene list
samplesize	sample size
threshold	p-value threshold
listGenProfs	list of genetic profiles
listCases	list of cases

Value

A table with genes classed by study

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.