Mutation_obj: Atribute mutation frequency to nodes

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Atribute mutation frequency to nodes

Description

Atribute mutation frequency to nodes

Usage

Mutation_obj(list,FreqMutThreshold, geneListLabel)

Arguments

list	A list of data frame with mutation data. Each data frame to study
FreqMutThreshold	threshold Rate of cases (patients) having mutation (0-1).
geneListLabel	file name of geneList examples: "73"

Value

A dat frame with mutation frequency. Ech column corresponds to a study.

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.