getMegaProfData: Search and get genetic profiles (CNA,mRNA, Methylation,...

In kmezhoud/bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Search and get genetic profiles (CNA,mRNA, Methylation, Mutation...) of gene list upper than 500

Description

Search and get genetic profiles (CNA,mRNA, Methylation, Mutation...) of gene list upper than 500

Usage

getMegaProfData(MegaGeneList, Study, GenProf, Case, Class)

Arguments

MegaGeneList	A list of genes upper than 500
Study	Study ID
GenProf	genetic profile reference
Case	Case reference
Class	indicates the panel ProfData or Mutdata

Details

See https://github.com/kmezhoud/bioCancer/wiki

Value

A data frame with Genetic profile

Examples

cgds <- cBioPortal(
hostname = "www.cbioportal.org",
protocol = "https",
api = "/api/v2/api-docs"
)
## Not run: 
getDataByGenes( api =  cgds,
studyId = "gbm_tcga_pub",
genes = c("NF1", "TP53", "ABL1"),
by = "hugoGeneSymbol",
molecularProfileIds = "gbm_tcga_pub_mrna"
)

## End(Not run)

kmezhoud/bioCancer documentation built on Feb. 17, 2024, 10:29 a.m.