gtex_protein: GTEx protein tissue specificity annotations

In lagelab/Genoppi: genoppi

GTEx protein tissue specificity annotations

Description

A dataset containing tissue specificity annotations for 12,184 genes in 32 tissues derived from proteomic data. See cited reference for details on the definition of tissue-specific genes.

Usage

gtex_protein

Format

A data frame with 686,624 rows and 3 variables:

tissue

Tissue name

gene

HGNC gene symbol

significant

Logical variable indicating whether or not the gene is tissue-specific

Source

Table S2 (TS dataset) downloaded on 2020-10-21 from: https://www.sciencedirect.com/science/article/pii/S0092867420310783

References

Jiang L, Wang M, Lin S, et al. A Quantitative Proteome Map of the Human Body. Cell. 2020;183(1):269-283.e19. doi:10.1016/j.cell.2020.08.036

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data3, example_data, genes_snps, gnomad_table, goa_bp_table, goa_cc_table, goa_mf_table, gtex_rna, gwas_table, hgnc_group_table, hpa_rna, inweb_table, irefindex_table, msigdb_c1_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.