gwas_table: NHGRI-EBI GWAS catalog genetic associations

In lagelab/Genoppi: genoppi

NHGRI-EBI GWAS catalog genetic associations

Description

A dataset containing 188,925 published trait-SNP associations in the NHGRI-EBI GWAS catalog.

Usage

gwas_table

Format

A data frame with 188,925 rows and 5 variables:

PUBMEDID

PubMed identification number

DISEASE.TRAIT

Disease or trait examined in study

SNP

SNP rsID

P.VALUE

Reported p-value

STUDY.ACCESSION

Accession ID allocated to a GWAS catalog study

Source

All associations v1.0.2 dataset (2020-03-08 release) downloaded on 2020-03-17 from: https://www.ebi.ac.uk/gwas/docs/file-downloads

References

Buniello A, MacArthur JAL, Cerezo M, et al. The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019. Nucleic Acids Res. 2019;47(D1):D1005-D1012. doi:10.1093/nar/gky1120

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data3, example_data, genes_snps, gnomad_table, goa_bp_table, goa_cc_table, goa_mf_table, gtex_protein, gtex_rna, hgnc_group_table, hpa_rna, inweb_table, irefindex_table, msigdb_c1_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.