hpa_rna: Human Protein Atlas (HPA) RNA tissue specificity annotations

In lagelab/Genoppi: genoppi

Human Protein Atlas (HPA) RNA tissue specificity annotations

Description

A dataset containing tissue specificity annotations for 19,634 genes in 33 tissues derived from HPA RNA-sequencing data. See cited reference and https://www.proteinatlas.org/humanproteome/tissue/tissue+specific for details on definition of tissue-specific (i.e. tissue-elevated) genes.

Usage

hpa_rna

Format

A data frame with 571,504 rows and 3 variables:

tissue

Tissue name

gene

HGNC gene symbol

significant

Logical variable: "TRUE" = gene has elevated expression in tissue; "FALSE" = gene is detected (but not elevated) in tissue

Source

proteinatlas.tsv.zip datasets (v19.3) downloaded on 2020-06-12 from: https://www.proteinatlas.org/about/download

References

Uhlén M, Fagerberg L, Hallström BM, et al. Proteomics. Tissue-based map of the human proteome. Science. 2015;347(6220):1260419. doi:10.1126/science.1260419

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data3, example_data, genes_snps, gnomad_table, goa_bp_table, goa_cc_table, goa_mf_table, gtex_protein, gtex_rna, gwas_table, hgnc_group_table, inweb_table, irefindex_table, msigdb_c1_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.