id_significant_proteins: Identify significant proteins

In lagelab/Genoppi: genoppi

Identify significant proteins

Description

Identify significant proteins based in input thresholds.

Usage

id_significant_proteins(
  df,
  logfc_dir = "positive",
  logfc_cutoff = NULL,
  p_cutoff = NULL,
  fdr_cutoff = 0.1
)

Arguments

df	data.frame containing logFC, pvalue, and FDR columns
logfc_dir	string indicating direction of logFC cutoff ("positive" or "negative")
logfc_cutoff	numeric value indicating logFC cutoff
p_cutoff	numeric value indicating pvalue cutoff
fdr_cutoff	numeric value indicating FDR cutoff

Value

data.frame containing df + signficanct column of boolean values indicating which df rows (proteins) are significant according to FDR correction.

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.