inweb_table: InWeb protein-protein interactions

In lagelab/Genoppi: genoppi

InWeb protein-protein interactions

Description

A dataset containing published protein-protein interactions for 18,814 human genes in InWeb_InBioMap (InWeb_IM) or InWeb3.

Usage

inweb_table

Format

A data frame with 883,356 rows and 4 variables:

Gene1

HGNC gene symbol of first protein

Gene2

HGNC gene symbol of second protein

Score

Interaction confidence score

Source

InWeb source version, "InWeb_IM" or "InWeb3"

Source

See cited references; InWeb_IM data (2016-9-12 release) downloaded from: https://inbio-discover.intomics.com/map.html#downloads

References

Li T, Wernersson R, Hansen RB, et al. A scored human protein-protein interaction network to catalyze genomic interpretation. Nat Methods. 2017;14(1):61-64. doi:10.1038/nmeth.4083

Lage K, Karlberg EO, Størling ZM, et al. A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol. 2007;25(3):309-316. doi:10.1038/nbt1295

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data3, example_data, genes_snps, gnomad_table, goa_bp_table, goa_cc_table, goa_mf_table, gtex_protein, gtex_rna, gwas_table, hgnc_group_table, hpa_rna, irefindex_table, msigdb_c1_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.