irefindex_table | R Documentation |
A dataset containing 396,984 published protein-protein interactions for 17,437 human genes in iRefIndex 17.0.
irefindex_table
A data.frame with 396,984 rows and 5 variables:
HGNC gene symbol of first protein
HGNC gene symbol of second protein
Highest PMID re-use
Lowest PMID re-use
Number of PMIDs
This dataset was generated from the source BioPlex database by excluding all non-binary and non-human interactions. HGNC gene symbols were then extracted from the database along with the relevant score columns. Rows corresponding to the same gene pairs were merged into a single row by keeping the maximum scores.
iRefIndex data (v17.0) downloaded on 2021-01-06 from: https://irefindex.vib.be/download/irefindex/data/archive/release_17.0/psi_mitab/MITAB2.6/
Razick S, Magklaras G, Donaldson IM. iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics. 2008;9:405. Published 2008 Sep 30. doi:10.1186/1471-2105-9-405
Other datasets:
accession_gene_table
,
bioplex_table
,
example_data2
,
example_data3
,
example_data
,
genes_snps
,
gnomad_table
,
goa_bp_table
,
goa_cc_table
,
goa_mf_table
,
gtex_protein
,
gtex_rna
,
gwas_table
,
hgnc_group_table
,
hpa_rna
,
inweb_table
,
msigdb_c1_table
,
msigdb_c2_table
,
msigdb_c3_table
,
msigdb_c4_table
,
msigdb_c5_table
,
msigdb_c6_table
,
msigdb_c7_table
,
msigdb_h_table
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