msigdb_c1_table: MSigDB C1 collection (positional gene sets) annotations

In lagelab/Genoppi: genoppi

MSigDB C1 collection (positional gene sets) annotations

Description

A dataset containing annotations for 38,340 genes in 299 MSigDB positional gene sets.

Usage

msigdb_c1_table

Format

A data frame with 38,340 rows and 2 variables:

Gene.symbol

HGNC gene symbol

Set.name

Gene set name

Source

C1: positional gene sets dataset (v7.1) downloaded on 2020-04-03 from: https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp

References

Subramanian A, Tamayo P, Mootha VK, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102(43):15545-15550. doi:10.1073/pnas.0506580102

Liberzon A, Birger C, Thorvaldsdóttir H, Ghandi M, Mesirov JP, Tamayo P. The Molecular Signatures Database (MSigDB) hallmark gene set collection. Cell Syst. 2015;1(6):417-425. doi:10.1016/j.cels.2015.12.004

See Also

Other datasets: accession_gene_table, bioplex_table, example_data2, example_data3, example_data, genes_snps, gnomad_table, goa_bp_table, goa_cc_table, goa_mf_table, gtex_protein, gtex_rna, gwas_table, hgnc_group_table, hpa_rna, inweb_table, irefindex_table, msigdb_c2_table, msigdb_c3_table, msigdb_c4_table, msigdb_c5_table, msigdb_c6_table, msigdb_c7_table, msigdb_h_table

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.