plot_tissue_enrichment: plot tissue enrichment

In lagelab/Genoppi: genoppi

plot tissue enrichment

Description

constructs a bar chart using ggplot to plot tissue enrichment.

Usage

plot_tissue_enrichment(
  data,
  col.tissue,
  col.value,
  xlab = "tissue",
  ylab = "Hypergeometric P-value",
  pvalue.line = NULL
)

Arguments

data	a data.frame
col.tissue	string. Column containing tissue names.
col.value	string. Column containing pvalue, FDR, enrichment for plotting.
xlab	x label
ylab	y label
pvalue.line	pvalue threshold to be displayed via a horisontal line.

See Also

Other ggplot: theme_genoppi_bar(), theme_scatter(), theme_volcano_custom(), theme_volcano()

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.