plotly_tissue_enrichment: plot tissue enrichment

In lagelab/Genoppi: genoppi

plot tissue enrichment

Description

constructs a bar chart using ggplot to plot tissue enrichment.

Usage

plotly_tissue_enrichment(
  data,
  col.tissue,
  col.value,
  col.value.text = NULL,
  pvalue.line = NULL,
  xlab = "",
  ylab = "",
  title = "",
  xlim = NULL,
  color.significant = "red",
  color.other = "orange",
  col.value.order = NULL
)

Arguments

data	a data.frame
col.tissue	string. Column containing tissue names.
col.value	string. Column containing pvalue, FDR, enrichment for plotting.
col.value.text	string. Column containing text that should be displayed when hovering over bar.
pvalue.line	p-value horizontal line.
xlab	string. x label.
ylab	string. y label.
title	string. title of plot.
xlim	vector of length 2.
color.significant	color of significant values. default is red.
color.other	color of non-signfificant values. Default is orange.
col.value.order	string that is either 'increasing' or 'decreasing'. Orders barplot accordingly.

See Also

Other plotly: add_plotly_layout_scatter(), add_plotly_layout_volcano(), add_plotly_line_unity(), add_plotly_threshold_lines(), add_plotly_trace()

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.