Description Usage Arguments Details Value Author(s) Examples
Creates an instance of S4 class TxFeatures
for storing
transcript features.
1 2 |
x |
|
type |
Character vector or factor, taking value
|
txName |
|
geneName |
|
TxFeatures
extends GRanges
with column slot type
specifying feature type. type
is a factor with levels
J
(splice junction), I
(internal exon),
F
(5' terminal exon), L
(3' terminal exon),
U
(unspliced transcript).
txName
and geneName
are CharacterLists storing
transcript and gene annotation, respectively.
TxFeatures
object
Leonard Goldstein
1 2 | gr <- GRanges(1, IRanges(101, 200), "+")
txf <- TxFeatures(gr, type = "J")
|
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