API for luannnguyen/hmfGeneAnnotation
Determines gene amplifications and biallelic losses from HMF pipeline output
| Global functions | |
|---|---|
| .onLoad | Source code |
| annotateVariantType | Man page Source code |
| calcChromArmPloidies | Man page Source code |
| calcHitScores | Man page Source code |
| cnvToGeneCnv | Source code |
| detBiallHitType | Man page Source code |
| detBiallStatus | Man page Source code |
| detGeneStatuses | Man page Source code |
| detReadingFrame | Man page Source code |
| ensgToHgncSymbol | Man page Source code |
| extractVcfFields | Man page Source code |
| filterVcf | Man page Source code |
| geneNamesToEnsg | Man page Source code |
| getBialleleCols | Source code |
| getCentromerePositions | Source code |
| getChromArms | Source code |
| getClinSig | Man page Source code |
| getGeneDiplotypeMaxEff | Man page Source code |
| hello | Man page |
| insColAfter | Man page Source code |
| mkClinvarTxt | Man page Source code |
| mkGeneDiplotypesCnvMut | Man page Source code |
| mkGeneDiplotypesMutMut | Man page Source code |
| mkGenesBed | Source code |
| mkMutProfileGeneCnv | Man page Source code |
| mkMutProfileSnvIndel | Man page Source code |
| preProcessGeneCnv | Man page Source code |
| retrieveHgncGeneList | Man page Source code |
| write.tsv | Man page Source code |
