detReadingFrame: Determines the reading frame in case of one or more...
In luannnguyen/hmfGeneAnnotation: Determines gene amplifications and biallelic losses from HMF pipeline output
Description
Usage
Arguments
Value
View source: R/postProcessDiplotypes.R
Description
Determines the reading frame in case of one or more frameshifts
Usage
1
detReadingFrame(gene.diplotypes, mut.profile.germ, mut.profile.som)
Arguments
gene.diplotypes
Table containing the mutation info of alleles 1 and 2
mut.profile.germ
Germ mut profile table
mut.profile.som
Som mut profile table
Value
A dataframe containing info of: the number of detected indels, the lengths of each
frameshift, the reading frame (sum of the frameshift lengths), and a logical indicating whether
the gene is out of frame
luannnguyen/hmfGeneAnnotation documentation built on May 6, 2020, 1:07 p.m.
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Description Usage Arguments Value
View source: R/postProcessDiplotypes.R
Description
Determines the reading frame in case of one or more frameshifts
Usage
1 | detReadingFrame(gene.diplotypes, mut.profile.germ, mut.profile.som)
|
Arguments
gene.diplotypes |
Table containing the mutation info of alleles 1 and 2 |
mut.profile.germ |
Germ mut profile table |
mut.profile.som |
Som mut profile table |
Value
A dataframe containing info of: the number of detected indels, the lengths of each frameshift, the reading frame (sum of the frameshift lengths), and a logical indicating whether the gene is out of frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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