Description Usage Arguments Value
View source: R/postProcessDiplotypes.R
Determines the reading frame in case of one or more frameshifts
1 | detReadingFrame(gene.diplotypes, mut.profile.germ, mut.profile.som)
|
gene.diplotypes |
Table containing the mutation info of alleles 1 and 2 |
mut.profile.germ |
Germ mut profile table |
mut.profile.som |
Som mut profile table |
A dataframe containing info of: the number of detected indels, the lengths of each frameshift, the reading frame (sum of the frameshift lengths), and a logical indicating whether the gene is out of frame
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