Description Usage Arguments Value
Primarily used to determine
1 2 3 4 5 6 7 | mkMutProfileSnvIndel(
df.snv.indel,
scoring = SCORING_MUT,
keep.only.first.eff = T,
filter.no.impact.variants = T,
verbose = T
)
|
df.snv.indel |
A germline/somatic table originating from HMF germline/somatic vcfs |
scoring |
A list containing the scoring for snpeff, clinvar, and enigma annotation values |
keep.only.first.eff |
Only keep first snpeff_eff (items are separated by '&')? |
verbose |
Show messages? |
The original input dataframe with annotation columns
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