geneNamesToEnsg: Retrieve ENSEMBL gene ids from a vector of gene names

In luannnguyen/hmfGeneAnnotation: Determines gene amplifications and biallelic losses from HMF pipeline output

Description

This function will attempt to retrieve ENSEMBL gene ids from a list of gene names from the HGNC database.

Usage

geneNamesToEnsg(
  gene.names,
  genes.hgnc = read.delim(GENES_HGNC, stringsAsFactors = F),
  na.rough.fix = F
)

Arguments

gene.names	A character vector of gene names
genes.hgnc	A HGNC genes list as a dataframe
na.rough.fix	Convert NA values to ” ?

Value

A character vector of ENSEMBL gene ids

luannnguyen/hmfGeneAnnotation documentation built on May 6, 2020, 1:07 p.m.