Description Usage Arguments Value
View source: R/preProcessCnv.R
Subsets PURPLE gene cnv file for genes of interest
1 2 3 4 5 6 7 | preProcessGeneCnv(
gene.cnv.file,
out.file,
bed.file = BED_FILE,
genes.enst2ensg.file = GENES_ENST2ENSG,
verbose = T
)
|
gene.cnv.file |
Path to PURPLE gene cnv file |
out.file |
Path to output file |
bed.file |
Path to bed file specifying the genome intervals to keep (defaults ot the one stored in this package) |
genes.enst2ensg.file |
Path to lookup table to convert ENSEMBL transcript to genes ids |
verbose |
Show progress messages? |
Nothing but writes the subsetted PURPLE gene cnv txt file
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