mkGeneDiplotypesCnvMut: Merge cnv and germ/som mut profiles into a table the...

In luannnguyen/hmfGeneAnnotation: Determines gene amplifications and biallelic losses from HMF pipeline output

Description

Merge cnv and germ/som mut profiles into a table the describes the events of allele 1 and 2

Usage

mkGeneDiplotypesCnvMut(
  mut.profile.cnv,
  mut.profile.mut,
  mut.origin,
  verbose = T
)

Arguments

mut.profile.cnv	CNV mut profile table
mut.profile.mut	germ or som mut profile table
mut.origin	Indicate whether allele 2 originates from 'germ' or 'som'. Used to create the diplotype_origin column
verbose	Print progress messages?

Value

A table the describes the events of allele 1 and 2

luannnguyen/hmfGeneAnnotation documentation built on May 6, 2020, 1:07 p.m.