Description Usage Arguments Value
Retrieve gene identifiers from HGNC
1 2 3 4 5 6 7 8 | retrieveHgncGeneList(
hgnc.url = "https://www.genenames.org/cgi-bin/download/custom?col=gd_hgnc_id&col=gd_app_sym&col=gd_prev_sym&col=gd_aliases&col=gd_pub_ensembl_id&status=Approved&hgnc_dbtag=on&order_by=gd_app_sym_sort&format=text&submit=submit",
out.path = NULL,
export.as.rdata = F,
verbose = T,
...
)
|
hgnc.url |
URL to HGNC database, where the output contains the columns: HGNC ID, Approved symbol, Previous symbols, Synonyms, ENSEMBL gene id |
out.path |
Export path |
export.as.rdata |
Save as RData file? |
verbose |
Show messages? |
... |
Arguments that can be passed to biomaRt::useMart() |
A dataframe of gene identifers from HGNC
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