mkGeneDiplotypesMutMut: Merge germ/som mut profiles into a table the describes the...
In luannnguyen/hmfGeneAnnotation: Determines gene amplifications and biallelic losses from HMF pipeline output
Description
Usage
Arguments
Value
View source: R/mkGeneDiplotypes.R
Description
Per gene, only the most pathogenic germ/som variant pairs are merged. This
prevents the table from growing exponentially.
Usage
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mkGeneDiplotypesMutMut(
mut.profile.mut1,
mut.profile.mut2,
diplotype.origin,
min.biall.score = c(3, 3),
get.max.effect.per.gene = T,
verbose = T
)
Arguments
mut.profile.mut1
germ/som mut profile table
mut.profile.mut2
germ/som mut profile table
diplotype.origin
Indicate the mut/mut combination: 'germ_som', 'som_som', 'germ_germ'
verbose
Print progress messages?
Value
A table the describes the events of allele 1 and 2
luannnguyen/hmfGeneAnnotation documentation built on May 6, 2020, 1:07 p.m.
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Description Usage Arguments Value
View source: R/mkGeneDiplotypes.R
Description
Per gene, only the most pathogenic germ/som variant pairs are merged. This prevents the table from growing exponentially.
Usage
1 2 3 4 5 6 7 8 | mkGeneDiplotypesMutMut(
mut.profile.mut1,
mut.profile.mut2,
diplotype.origin,
min.biall.score = c(3, 3),
get.max.effect.per.gene = T,
verbose = T
)
|
Arguments
mut.profile.mut1 |
germ/som mut profile table |
mut.profile.mut2 |
germ/som mut profile table |
diplotype.origin |
Indicate the mut/mut combination: 'germ_som', 'som_som', 'germ_germ' |
verbose |
Print progress messages? |
Value
A table the describes the events of allele 1 and 2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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