Files in luismurao/ntbox
From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/biaslayer.R R/bin_model.R R/binomial_test.R R/clean_dup.R R/confu_mat_optim.R R/correlation_finder.R R/cov_center.R R/ellipsoid_cluster_plot_3d.R R/ellipsoid_selection.R R/ellipsoidfit.R R/ellipsoidfit2.R R/exdet_multvar.R R/exdet_univar.R R/get_bio_oracle.R R/get_chelsa.R R/get_envirem_clim.R R/get_envirem_elev.R R/inEllipsoid.R R/maxent_call.R R/mop.R R/nc.R R/ntb_mess.R R/occs_history.R R/omission_rate.R R/pROC.R R/rlayers_ntb.R R/run_ntbox.R R/sample_envbg.R R/search_gbif_data.R R/spca.R R/spca_project.R R/swd_format.R README.md
_pkgdown.yml
docs/404.html
docs/articles/GBIF_data_curation.html
docs/articles/GBIF_data_curation_files/Proj4Leaflet-1.0.1/proj4-compressed.js
docs/articles/GBIF_data_curation_files/Proj4Leaflet-1.0.1/proj4leaflet.js
docs/articles/GBIF_data_curation_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/GBIF_data_curation_files/jquery-1.12.4/jquery.min.js
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/layers-2x.png
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/layers.png
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/marker-icon-2x.png
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/marker-icon.png
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/marker-shadow.png
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/leaflet.css
docs/articles/GBIF_data_curation_files/leaflet-1.3.1/leaflet.js
docs/articles/GBIF_data_curation_files/leaflet-binding-2.0.3/leaflet.js
docs/articles/GBIF_data_curation_files/leafletfix-1.0.0/leafletfix.css
docs/articles/GBIF_data_curation_files/rstudio_leaflet-1.3.1/images/1px.png
docs/articles/GBIF_data_curation_files/rstudio_leaflet-1.3.1/rstudio_leaflet.css
docs/articles/ellipsoid_selection.html
docs/articles/ellipsoid_selection_files/CanvasMatrix4-2016/CanvasMatrix.src.js
docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/ellipsoid_selection_files/figure-html/unnamed-chunk-15-2.png
docs/articles/ellipsoid_selection_files/figure-html/unnamed-chunk-4-1.png
docs/articles/ellipsoid_selection_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery-AUTHORS.txt
docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery.js
docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery.min.js
docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery.min.map
docs/articles/ellipsoid_selection_files/rglWebGL-binding-0.100.30/rglWebGL.js
docs/articles/ellipsoid_selection_files/rglwidgetClass-2/rgl.css
docs/articles/ellipsoid_selection_files/rglwidgetClass-2/rglClass.src.js
docs/articles/figures/10_tutorial.png
docs/articles/figures/12_tutorial.png
docs/articles/figures/24_tutorial.png
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docs/articles/figures/45_tutorial.png
docs/articles/figures/56_tutorial.png
docs/articles/figures/59_tutorial.png
docs/articles/figures/ambystoma_tigrinum_animatedMapNTB.gif
docs/articles/figures/ntbox.png
docs/articles/figures/ntbox_01_appsettings.png
docs/articles/figures/ntbox_01_appsettings_01.png
docs/articles/figures/ntbox_01_appsettings_01b.png
docs/articles/figures/ntbox_01_appsettings_02.png
docs/articles/figures/ntbox_01_appsettings_03.png
docs/articles/figures/ntbox_01_dynamic.png
docs/articles/figures/ntbox_02_dynamicpol_01.png
docs/articles/figures/ntbox_02_dynamicpol_02.png
docs/articles/figures/ntbox_02_dynamicpol_03.png
docs/articles/figures/ntbox_02_gbifvis.png
docs/articles/figures/ntbox_02_userdata.png
docs/articles/figures/ntbox_03_extract.png
docs/articles/figures/ntbox_03_nvisual.png
docs/articles/figures/ntbox_04_corM.png
docs/articles/figures/ntbox_04_corgram.png
docs/articles/figures/ntbox_04_ncors.png
docs/articles/figures/ntbox_05_ncluster.png
docs/articles/figures/ntbox_05_ncluster_2.png
docs/articles/figures/ntbox_06_Ellips.png
docs/articles/figures/ntbox_06_Gproj.png
docs/articles/figures/ntbox_06_bioclim.png
docs/articles/figures/ntbox_06_nicheM.png
docs/articles/figures/ntbox_07_bin.png
docs/articles/figures/ntbox_07_binmethods.png
docs/articles/figures/ntbox_07_binomial.png
docs/articles/figures/ntbox_07_binomialRes.png
docs/articles/figures/ntbox_07_confmat.png
docs/articles/figures/ntbox_07_confmat_bin.png
docs/articles/figures/ntbox_07_confumat_res.png
docs/articles/figures/ntbox_07_percentil_res.png
docs/articles/figures/ntbox_07_percentil_selec.png
docs/articles/figures/ntbox_07_proc.png
docs/articles/figures/ntbox_07_proc2.png
docs/articles/figures/ntbox_07_userth.png
docs/articles/figures/ntbox_07_userthR.png
docs/articles/figures/ntbox_08_exdet1.png
docs/articles/figures/ntbox_08_exdet2.png
docs/articles/figures/ntbox_08_exdet3.png
docs/articles/figures/ntbox_08_extrapol.png
docs/articles/figures/ntbox_08_mess.png
docs/articles/figures/ntbox_08_mess1.png
docs/articles/figures/ntbox_08_mop0.png
docs/articles/figures/ntbox_08_mop2.png
docs/articles/figures/ntbox_08_mop3.png
docs/articles/figures/ntbox_08_mop4.png
docs/articles/figures/ntbox_09_cropMask1.png
docs/articles/figures/ntbox_09_cropmask2.png
docs/articles/figures/ntbox_09_cropmask3.png
docs/articles/figures/ntbox_09_export.png
docs/articles/figures/ntbox_09_export2.png
docs/articles/figures/ntbox_09_export3.png
docs/articles/figures/ntbox_09_export4.png
docs/articles/figures/ntbox_09_pca1.png
docs/articles/figures/ntbox_09_pca_r1.png
docs/articles/figures/ntbox_09_pca_r2.png
docs/articles/figures/ntbox_10_enm.png
docs/articles/figures/ntbox_10_enm_eval.png
docs/articles/figures/ntbox_10_env_data.png
docs/articles/figures/ntbox_10_gdata.png
docs/articles/figures/ntbox_10_workflow_sv.png
docs/articles/figures/ntbox_pca_02.png
docs/articles/figures/ntbox_pcs_03.png
docs/articles/figures/ntbx_02_gbif.png
docs/articles/gui_reference.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/biaslayer-1.png
docs/reference/biaslayer.html
docs/reference/bin_model.html
docs/reference/binomial_test.html
docs/reference/clean_dup.html
docs/reference/confu_mat_optim.html
docs/reference/correlation_finder.html
docs/reference/cov_center.html
docs/reference/ellipsoid_cluster_plot_3d.html
docs/reference/ellipsoid_omr.html
docs/reference/ellipsoid_selection.html
docs/reference/ellipsoidfit.html
docs/reference/exdet_multvar-1.png
docs/reference/exdet_multvar.html
docs/reference/exdet_univar-1.png
docs/reference/exdet_univar.html
docs/reference/get_bio_oracle.html
docs/reference/get_chelsa.html
docs/reference/get_envirem_clim.html
docs/reference/get_envirem_elev.html
docs/reference/inEllipsoid.html
docs/reference/index.html
docs/reference/maxent_call.html
docs/reference/mop-1.png
docs/reference/mop.html
docs/reference/nc.html
docs/reference/ntb_mess-1.png
docs/reference/ntb_mess.html
docs/reference/occs_history.html
docs/reference/omission_rate.html
docs/reference/pROC.html
docs/reference/plot_out.html
docs/reference/rlayers_ntb.html
docs/reference/run_ntbox.html
docs/reference/sample_envbg.html
docs/reference/searh_gbif_data.html
docs/reference/spca-1.png
docs/reference/spca.html
docs/reference/swd_format.html
docs/reference/trapozoid_roc.html
inst/CITATION
inst/extdata/I_scapularis_eval.csv
inst/extdata/ambystoma_model.tif
inst/extdata/ambystoma_validation.csv
inst/extdata/binary_ixodes.tif
inst/extdata/bio01_bias.tif
inst/extdata/bio_05Norm.asc
inst/extdata/bio_05NormG_layers.tif
inst/extdata/bio_05NormM_layers.tif
inst/extdata/bio_06Norm.asc
inst/extdata/bio_06NormG_layers.tif
inst/extdata/bio_06NormM_layers.tif
inst/extdata/bio_12Norm.asc
inst/extdata/bio_12NormG_layers.tif
inst/extdata/bio_12NormM_layers.tif
inst/extdata/bio_oracle.rds
inst/extdata/bios/bio01.tif
inst/extdata/bios/bio02.tif
inst/extdata/bios/bio03.tif
inst/extdata/bios/bio04.tif
inst/extdata/bios/bio05.tif
inst/extdata/bios/bio06.tif
inst/extdata/bios/bio07.tif
inst/extdata/bios/bio08.tif
inst/extdata/bios/bio09.tif
inst/extdata/bios/bio10.tif
inst/extdata/bios/bio11.tif
inst/extdata/bios/bio12.tif
inst/extdata/bios/bio13.tif
inst/extdata/bios/bio14.tif
inst/extdata/bios/bio15.tif
inst/extdata/bios/bio16.tif
inst/extdata/bios/bio17.tif
inst/extdata/bios/bio18.tif
inst/extdata/bios/bio19.tif
inst/extdata/birdsN_America.csv
inst/extdata/cardon_occs.csv
inst/extdata/cardon_virtual.csv
inst/extdata/chelsa_vars.rds
inst/extdata/earth_env_hetero.rds
inst/extdata/earth_env_lcover.rds
inst/extdata/envirem_clim_current.rds
inst/extdata/envirem_clim_pass.rds
inst/extdata/envirem_elevation.rds
inst/extdata/nichekmeansCluster.csv
inst/extdata/p_gigas.csv
inst/extdata/p_gigas.tif
inst/shinyApp/helpers/ClusterRegistry1.R inst/shinyApp/helpers/ellipsoid_3D_plot.R inst/shinyApp/helpers/ldraw2sp.R inst/shinyApp/helpers/pROC.R inst/shinyApp/load_install_pkgs.R inst/shinyApp/ntb_report/MotChartInstructions.Rmd inst/shinyApp/ntb_report/data_report.Rmd inst/shinyApp/ntb_report/enm_report.Rmd inst/shinyApp/ntb_report/extrapolation_risk.Rmd inst/shinyApp/ntb_report/model_eval.Rmd inst/shinyApp/ntb_report/niche_data_report.Rmd
inst/shinyApp/ntb_report/www/flash_settings_01.png
inst/shinyApp/ntb_report/www/flash_settings_02.png
inst/shinyApp/ntb_report/www/flash_settings_03.png
inst/shinyApp/ntb_report/www/flash_settings_04.png
inst/shinyApp/scatter3d/scatterplot.R inst/shinyApp/server.R inst/shinyApp/server_funcs/bin_test_methods.R inst/shinyApp/server_funcs/binary_map_methods.R inst/shinyApp/server_funcs/bioclim_methods.R inst/shinyApp/server_funcs/correlation_methods.R inst/shinyApp/server_funcs/data_gbif.R inst/shinyApp/server_funcs/data_user.R inst/shinyApp/server_funcs/dynamicMapMethods.R inst/shinyApp/server_funcs/ellipsoid_methods.R inst/shinyApp/server_funcs/ellipsoid_selection_methods.R inst/shinyApp/server_funcs/extrapolation_methods.R inst/shinyApp/server_funcs/gistools_methods.R inst/shinyApp/server_funcs/k_means_methods.R inst/shinyApp/server_funcs/model_proj_methods.R inst/shinyApp/server_funcs/mop_methods.R inst/shinyApp/server_funcs/niche_layers.R inst/shinyApp/server_funcs/niche_layers_extract.R inst/shinyApp/server_funcs/niche_space_visualizations.R inst/shinyApp/server_funcs/partial_roc_methods.R inst/shinyApp/ui.R inst/shinyApp/ui_layers/directoryInput.R
inst/shinyApp/ui_layers/style/gomap.js
inst/shinyApp/ui_layers/style/google-analytics.js
inst/shinyApp/ui_layers/style/styles.css
inst/shinyApp/ui_layers/ui_G_projection_models.R inst/shinyApp/ui_layers/ui_MData.R inst/shinyApp/ui_layers/ui_binary_map.R inst/shinyApp/ui_layers/ui_binomial.R inst/shinyApp/ui_layers/ui_bioclim_model.R inst/shinyApp/ui_layers/ui_correlation_plot.R inst/shinyApp/ui_layers/ui_correlation_strong.R inst/shinyApp/ui_layers/ui_correlation_table.R inst/shinyApp/ui_layers/ui_dynamicMap.R inst/shinyApp/ui_layers/ui_ellipsoid_model_c.R inst/shinyApp/ui_layers/ui_ellipsoid_selection.R inst/shinyApp/ui_layers/ui_extrapolation.R inst/shinyApp/ui_layers/ui_gbifVis.R inst/shinyApp/ui_layers/ui_gbif_search.R inst/shinyApp/ui_layers/ui_gistools.R inst/shinyApp/ui_layers/ui_kmeans.R inst/shinyApp/ui_layers/ui_maxent.R inst/shinyApp/ui_layers/ui_mop.R inst/shinyApp/ui_layers/ui_niche_vis.R inst/shinyApp/ui_layers/ui_partial_roc.R inst/shinyApp/ui_layers/ui_settings.R inst/shinyApp/ui_layers/ui_user_data.R inst/shinyApp/workflow_events/settings_workflow_obs.R
inst/shinyApp/www/especifi.png
inst/shinyApp/www/fecom.png
inst/shinyApp/www/feom.png
inst/shinyApp/www/js/directory_input_binding.js
inst/shinyApp/www/miss_rate.png
inst/shinyApp/www/nega_predi_pw.png
inst/shinyApp/www/posi_class_rate.png
inst/shinyApp/www/posi_pred_pw.png
inst/shinyApp/www/prevalencia.png
inst/shinyApp/www/sensi.png
man/biaslayer.Rd man/bin_model.Rd man/binomial_test.Rd man/clean_dup.Rd man/confu_mat_optim.Rd man/correlation_finder.Rd man/cov_center.Rd man/ellipsoid_cluster_plot_3d.Rd man/ellipsoid_omr.Rd man/ellipsoid_selection.Rd man/ellipsoidfit.Rd man/ellipsoidfit2.Rd man/exdet_multvar.Rd man/exdet_univar.Rd man/get_bio_oracle.Rd man/get_chelsa.Rd man/get_envirem_clim.Rd man/get_envirem_elev.Rd man/inEllipsoid.Rd man/maxent_call.Rd man/mop.Rd man/nc.Rd man/ntb_mess.Rd man/occs_history.Rd man/omission_rate.Rd man/pROC.Rd man/plot_out.Rd man/rlayers_ntb.Rd man/run_ntbox.Rd man/sample_envbg.Rd man/search_gbif_data.Rd man/spca.Rd man/spca_project.Rd man/swd_format.Rd
ntbox.Rproj
vignettes/.gitignore
vignettes/GBIF_data_curation.Rmd
vignettes/ambysPRoc.csv
vignettes/ambysValidation.csv
vignettes/ellipsoid_selection.Rmd
vignettes/figures/10_tutorial.png
vignettes/figures/12_tutorial.png
vignettes/figures/24_tutorial.png
vignettes/figures/25_tutorial.png
vignettes/figures/27_tutorial.png
vignettes/figures/29_tutorial.png
vignettes/figures/37_tutorial.png
vignettes/figures/38_tutorial.png
vignettes/figures/40_tutorial.png
vignettes/figures/41_tutorial.png
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vignettes/figures/43_tutorial.png
vignettes/figures/45_tutorial.png
vignettes/figures/56_tutorial.png
vignettes/figures/59_tutorial.png
vignettes/figures/ambystoma_tigrinum_animatedMapNTB.gif
vignettes/figures/ntbox.png
vignettes/figures/ntbox_01_appsettings.png
vignettes/figures/ntbox_01_appsettings_01.png
vignettes/figures/ntbox_01_appsettings_01b.png
vignettes/figures/ntbox_01_appsettings_02.png
vignettes/figures/ntbox_01_appsettings_03.png
vignettes/figures/ntbox_01_dynamic.png
vignettes/figures/ntbox_02_dynamicpol_01.png
vignettes/figures/ntbox_02_dynamicpol_02.png
vignettes/figures/ntbox_02_dynamicpol_03.png
vignettes/figures/ntbox_02_gbifvis.png
vignettes/figures/ntbox_02_userdata.png
vignettes/figures/ntbox_03_extract.png
vignettes/figures/ntbox_03_nvisual.png
vignettes/figures/ntbox_03_workflow_G.png
vignettes/figures/ntbox_04_corM.png
vignettes/figures/ntbox_04_corgram.png
vignettes/figures/ntbox_04_ncors.png
vignettes/figures/ntbox_05_ncluster.png
vignettes/figures/ntbox_05_ncluster_2.png
vignettes/figures/ntbox_06_Ellips.png
vignettes/figures/ntbox_06_Gproj.png
vignettes/figures/ntbox_06_bioclim.png
vignettes/figures/ntbox_06_nicheM.png
vignettes/figures/ntbox_07_bin.png
vignettes/figures/ntbox_07_binmethods.png
vignettes/figures/ntbox_07_binomial.png
vignettes/figures/ntbox_07_binomialRes.png
vignettes/figures/ntbox_07_confmat.png
vignettes/figures/ntbox_07_confmat_bin.png
vignettes/figures/ntbox_07_confumat_res.png
vignettes/figures/ntbox_07_percentil_res.png
vignettes/figures/ntbox_07_percentil_selec.png
vignettes/figures/ntbox_07_proc.png
vignettes/figures/ntbox_07_proc2.png
vignettes/figures/ntbox_07_userth.png
vignettes/figures/ntbox_07_userthR.png
vignettes/figures/ntbox_08_exdet1.png
vignettes/figures/ntbox_08_exdet2.png
vignettes/figures/ntbox_08_exdet3.png
vignettes/figures/ntbox_08_extrapol.png
vignettes/figures/ntbox_08_mess.png
vignettes/figures/ntbox_08_mess1.png
vignettes/figures/ntbox_08_mop.png
vignettes/figures/ntbox_08_mop0.png
vignettes/figures/ntbox_08_mop1.png
vignettes/figures/ntbox_08_mop2.png
vignettes/figures/ntbox_08_mop3.png
vignettes/figures/ntbox_08_mop4.png
vignettes/figures/ntbox_09_cropMask1.png
vignettes/figures/ntbox_09_cropmask2.png
vignettes/figures/ntbox_09_cropmask3.png
vignettes/figures/ntbox_09_export.png
vignettes/figures/ntbox_09_export2.png
vignettes/figures/ntbox_09_export3.png
vignettes/figures/ntbox_09_export4.png
vignettes/figures/ntbox_09_pca1.png
vignettes/figures/ntbox_09_pca_r1.png
vignettes/figures/ntbox_09_pca_r2.png
vignettes/figures/ntbox_10_enm.png
vignettes/figures/ntbox_10_enm_eval.png
vignettes/figures/ntbox_10_env_data.png
vignettes/figures/ntbox_10_gdata.png
vignettes/figures/ntbox_10_workflow_sv.png
vignettes/figures/ntbox_cropmask2.png
vignettes/figures/ntbox_gui.png
vignettes/figures/ntbox_pca_02.png
vignettes/figures/ntbox_pcs_03.png
vignettes/figures/ntbx_02_gbif.png
vignettes/gui_reference.Rmd
vignettes/library.bib
luismurao/ntbox documentation built on May 9, 2024, 8:24 p.m.