Files in luismurao/ntbox
From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

.DS_Store

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/biaslayer.R R/bin_model.R R/binomial_test.R R/clean_dup.R R/confu_mat_optim.R R/correlation_finder.R R/cov_center.R R/ellipsoid_cluster_plot_3d.R R/ellipsoid_selection.R R/ellipsoidfit.R R/ellipsoidfit2.R R/exdet_multvar.R R/exdet_univar.R R/get_bio_oracle.R R/get_chelsa.R R/get_envirem_clim.R R/get_envirem_elev.R R/inEllipsoid.R R/maxent_call.R R/mop.R R/nc.R R/ntb_mess.R R/occs_history.R R/omission_rate.R R/pROC.R R/rlayers_ntb.R R/run_ntbox.R R/sample_envbg.R R/search_gbif_data.R R/spca.R R/spca_project.R R/swd_format.R README.md

_pkgdown.yml

docs/404.html

docs/articles/GBIF_data_curation.html

docs/articles/GBIF_data_curation_files/Proj4Leaflet-1.0.1/proj4-compressed.js

docs/articles/GBIF_data_curation_files/Proj4Leaflet-1.0.1/proj4leaflet.js

docs/articles/GBIF_data_curation_files/htmlwidgets-1.5.1/htmlwidgets.js

docs/articles/GBIF_data_curation_files/jquery-1.12.4/jquery.min.js

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/layers-2x.png

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/layers.png

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/marker-icon-2x.png

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/marker-icon.png

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/images/marker-shadow.png

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/leaflet.css

docs/articles/GBIF_data_curation_files/leaflet-1.3.1/leaflet.js

docs/articles/GBIF_data_curation_files/leaflet-binding-2.0.3/leaflet.js

docs/articles/GBIF_data_curation_files/leafletfix-1.0.0/leafletfix.css

docs/articles/GBIF_data_curation_files/rstudio_leaflet-1.3.1/images/1px.png

docs/articles/GBIF_data_curation_files/rstudio_leaflet-1.3.1/rstudio_leaflet.css

docs/articles/ellipsoid_selection.html

docs/articles/ellipsoid_selection_files/CanvasMatrix4-2016/CanvasMatrix.src.js

docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/css/crosstalk.css

docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.js

docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.js.map

docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.min.js

docs/articles/ellipsoid_selection_files/crosstalk-1.0.0/js/crosstalk.min.js.map

docs/articles/ellipsoid_selection_files/figure-html/unnamed-chunk-15-2.png

docs/articles/ellipsoid_selection_files/figure-html/unnamed-chunk-4-1.png

docs/articles/ellipsoid_selection_files/htmlwidgets-1.5.1/htmlwidgets.js

docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery-AUTHORS.txt

docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery.js

docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery.min.js

docs/articles/ellipsoid_selection_files/jquery-1.11.3/jquery.min.map

docs/articles/ellipsoid_selection_files/rglWebGL-binding-0.100.30/rglWebGL.js

docs/articles/ellipsoid_selection_files/rglwidgetClass-2/rgl.css

docs/articles/ellipsoid_selection_files/rglwidgetClass-2/rglClass.src.js

docs/articles/figures/10_tutorial.png

docs/articles/figures/12_tutorial.png

docs/articles/figures/24_tutorial.png

docs/articles/figures/25_tutorial.png

docs/articles/figures/27_tutorial.png

docs/articles/figures/29_tutorial.png

docs/articles/figures/37_tutorial.png

docs/articles/figures/38_tutorial.png

docs/articles/figures/40_tutorial.png

docs/articles/figures/41_tutorial.png

docs/articles/figures/42_tutorial.png

docs/articles/figures/43_tutorial.png

docs/articles/figures/45_tutorial.png

docs/articles/figures/56_tutorial.png

docs/articles/figures/59_tutorial.png

docs/articles/figures/ambystoma_tigrinum_animatedMapNTB.gif

docs/articles/figures/ntbox.png

docs/articles/figures/ntbox_01_appsettings.png

docs/articles/figures/ntbox_01_appsettings_01.png

docs/articles/figures/ntbox_01_appsettings_01b.png

docs/articles/figures/ntbox_01_appsettings_02.png

docs/articles/figures/ntbox_01_appsettings_03.png

docs/articles/figures/ntbox_01_dynamic.png

docs/articles/figures/ntbox_02_dynamicpol_01.png

docs/articles/figures/ntbox_02_dynamicpol_02.png

docs/articles/figures/ntbox_02_dynamicpol_03.png

docs/articles/figures/ntbox_02_gbifvis.png

docs/articles/figures/ntbox_02_userdata.png

docs/articles/figures/ntbox_03_extract.png

docs/articles/figures/ntbox_03_nvisual.png

docs/articles/figures/ntbox_04_corM.png

docs/articles/figures/ntbox_04_corgram.png

docs/articles/figures/ntbox_04_ncors.png

docs/articles/figures/ntbox_05_ncluster.png

docs/articles/figures/ntbox_05_ncluster_2.png

docs/articles/figures/ntbox_06_Ellips.png

docs/articles/figures/ntbox_06_Gproj.png

docs/articles/figures/ntbox_06_bioclim.png

docs/articles/figures/ntbox_06_nicheM.png

docs/articles/figures/ntbox_07_bin.png

docs/articles/figures/ntbox_07_binmethods.png

docs/articles/figures/ntbox_07_binomial.png

docs/articles/figures/ntbox_07_binomialRes.png

docs/articles/figures/ntbox_07_confmat.png

docs/articles/figures/ntbox_07_confmat_bin.png

docs/articles/figures/ntbox_07_confumat_res.png

docs/articles/figures/ntbox_07_percentil_res.png

docs/articles/figures/ntbox_07_percentil_selec.png

docs/articles/figures/ntbox_07_proc.png

docs/articles/figures/ntbox_07_proc2.png

docs/articles/figures/ntbox_07_userth.png

docs/articles/figures/ntbox_07_userthR.png

docs/articles/figures/ntbox_08_exdet1.png

docs/articles/figures/ntbox_08_exdet2.png

docs/articles/figures/ntbox_08_exdet3.png

docs/articles/figures/ntbox_08_extrapol.png

docs/articles/figures/ntbox_08_mess.png

docs/articles/figures/ntbox_08_mess1.png

docs/articles/figures/ntbox_08_mop0.png

docs/articles/figures/ntbox_08_mop2.png

docs/articles/figures/ntbox_08_mop3.png

docs/articles/figures/ntbox_08_mop4.png

docs/articles/figures/ntbox_09_cropMask1.png

docs/articles/figures/ntbox_09_cropmask2.png

docs/articles/figures/ntbox_09_cropmask3.png

docs/articles/figures/ntbox_09_export.png

docs/articles/figures/ntbox_09_export2.png

docs/articles/figures/ntbox_09_export3.png

docs/articles/figures/ntbox_09_export4.png

docs/articles/figures/ntbox_09_pca1.png

docs/articles/figures/ntbox_09_pca_r1.png

docs/articles/figures/ntbox_09_pca_r2.png

docs/articles/figures/ntbox_10_enm.png

docs/articles/figures/ntbox_10_enm_eval.png

docs/articles/figures/ntbox_10_env_data.png

docs/articles/figures/ntbox_10_gdata.png

docs/articles/figures/ntbox_10_workflow_sv.png

docs/articles/figures/ntbox_pca_02.png

docs/articles/figures/ntbox_pcs_03.png

docs/articles/figures/ntbx_02_gbif.png

docs/articles/gui_reference.html

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/biaslayer-1.png

docs/reference/biaslayer.html

docs/reference/bin_model.html

docs/reference/binomial_test.html

docs/reference/clean_dup.html

docs/reference/confu_mat_optim.html

docs/reference/correlation_finder.html

docs/reference/cov_center.html

docs/reference/ellipsoid_cluster_plot_3d.html

docs/reference/ellipsoid_omr.html

docs/reference/ellipsoid_selection.html

docs/reference/ellipsoidfit.html

docs/reference/exdet_multvar-1.png

docs/reference/exdet_multvar.html

docs/reference/exdet_univar-1.png

docs/reference/exdet_univar.html

docs/reference/get_bio_oracle.html

docs/reference/get_chelsa.html

docs/reference/get_envirem_clim.html

docs/reference/get_envirem_elev.html

docs/reference/inEllipsoid.html

docs/reference/index.html

docs/reference/maxent_call.html

docs/reference/mop-1.png

docs/reference/mop.html

docs/reference/nc.html

docs/reference/ntb_mess-1.png

docs/reference/ntb_mess.html

docs/reference/occs_history.html

docs/reference/omission_rate.html

docs/reference/pROC.html

docs/reference/plot_out.html

docs/reference/rlayers_ntb.html

docs/reference/run_ntbox.html

docs/reference/sample_envbg.html

docs/reference/searh_gbif_data.html

docs/reference/spca-1.png

docs/reference/spca.html

docs/reference/swd_format.html

docs/reference/trapozoid_roc.html

inst/CITATION

inst/extdata/I_scapularis_eval.csv

inst/extdata/ambystoma_model.tif

inst/extdata/ambystoma_validation.csv

inst/extdata/binary_ixodes.tif

inst/extdata/bio01_bias.tif

inst/extdata/bio_05Norm.asc

inst/extdata/bio_05NormG_layers.tif

inst/extdata/bio_05NormM_layers.tif

inst/extdata/bio_06Norm.asc

inst/extdata/bio_06NormG_layers.tif

inst/extdata/bio_06NormM_layers.tif

inst/extdata/bio_12Norm.asc

inst/extdata/bio_12NormG_layers.tif

inst/extdata/bio_12NormM_layers.tif

inst/extdata/bio_oracle.rds

inst/extdata/bios/bio01.tif

inst/extdata/bios/bio02.tif

inst/extdata/bios/bio03.tif

inst/extdata/bios/bio04.tif

inst/extdata/bios/bio05.tif

inst/extdata/bios/bio06.tif

inst/extdata/bios/bio07.tif

inst/extdata/bios/bio08.tif

inst/extdata/bios/bio09.tif

inst/extdata/bios/bio10.tif

inst/extdata/bios/bio11.tif

inst/extdata/bios/bio12.tif

inst/extdata/bios/bio13.tif

inst/extdata/bios/bio14.tif

inst/extdata/bios/bio15.tif

inst/extdata/bios/bio16.tif

inst/extdata/bios/bio17.tif

inst/extdata/bios/bio18.tif

inst/extdata/bios/bio19.tif

inst/extdata/birdsN_America.csv

inst/extdata/cardon_occs.csv

inst/extdata/cardon_virtual.csv

inst/extdata/chelsa_vars.rds

inst/extdata/earth_env_hetero.rds

inst/extdata/earth_env_lcover.rds

inst/extdata/envirem_clim_current.rds

inst/extdata/envirem_clim_pass.rds

inst/extdata/envirem_elevation.rds

inst/extdata/nichekmeansCluster.csv

inst/extdata/p_gigas.csv

inst/extdata/p_gigas.tif

inst/shinyApp/helpers/ClusterRegistry1.R inst/shinyApp/helpers/ellipsoid_3D_plot.R inst/shinyApp/helpers/ldraw2sp.R inst/shinyApp/helpers/pROC.R inst/shinyApp/load_install_pkgs.R inst/shinyApp/ntb_report/MotChartInstructions.Rmd inst/shinyApp/ntb_report/data_report.Rmd inst/shinyApp/ntb_report/enm_report.Rmd inst/shinyApp/ntb_report/extrapolation_risk.Rmd inst/shinyApp/ntb_report/model_eval.Rmd inst/shinyApp/ntb_report/niche_data_report.Rmd

inst/shinyApp/ntb_report/www/flash_settings_01.png

inst/shinyApp/ntb_report/www/flash_settings_02.png

inst/shinyApp/ntb_report/www/flash_settings_03.png

inst/shinyApp/ntb_report/www/flash_settings_04.png

inst/shinyApp/ui_layers/style/gomap.js

inst/shinyApp/ui_layers/style/google-analytics.js

inst/shinyApp/ui_layers/style/styles.css

inst/shinyApp/www/especifi.png

inst/shinyApp/www/fecom.png

inst/shinyApp/www/feom.png

inst/shinyApp/www/js/directory_input_binding.js

inst/shinyApp/www/miss_rate.png

inst/shinyApp/www/nega_predi_pw.png

inst/shinyApp/www/posi_class_rate.png

inst/shinyApp/www/posi_pred_pw.png

inst/shinyApp/www/prevalencia.png

inst/shinyApp/www/sensi.png

man/biaslayer.Rd man/bin_model.Rd man/binomial_test.Rd man/clean_dup.Rd man/confu_mat_optim.Rd man/correlation_finder.Rd man/cov_center.Rd man/ellipsoid_cluster_plot_3d.Rd man/ellipsoid_omr.Rd man/ellipsoid_selection.Rd man/ellipsoidfit.Rd man/ellipsoidfit2.Rd man/exdet_multvar.Rd man/exdet_univar.Rd man/get_bio_oracle.Rd man/get_chelsa.Rd man/get_envirem_clim.Rd man/get_envirem_elev.Rd man/inEllipsoid.Rd man/maxent_call.Rd man/mop.Rd man/nc.Rd man/ntb_mess.Rd man/occs_history.Rd man/omission_rate.Rd man/pROC.Rd man/plot_out.Rd man/rlayers_ntb.Rd man/run_ntbox.Rd man/sample_envbg.Rd man/search_gbif_data.Rd man/spca.Rd man/spca_project.Rd man/swd_format.Rd

ntbox.Rproj

vignettes/.gitignore

vignettes/GBIF_data_curation.Rmd

vignettes/ambysPRoc.csv

vignettes/ambysValidation.csv

vignettes/ellipsoid_selection.Rmd

vignettes/figures/10_tutorial.png

vignettes/figures/12_tutorial.png

vignettes/figures/24_tutorial.png

vignettes/figures/25_tutorial.png

vignettes/figures/27_tutorial.png

vignettes/figures/29_tutorial.png

vignettes/figures/37_tutorial.png

vignettes/figures/38_tutorial.png

vignettes/figures/40_tutorial.png

vignettes/figures/41_tutorial.png

vignettes/figures/42_tutorial.png

vignettes/figures/43_tutorial.png

vignettes/figures/45_tutorial.png

vignettes/figures/56_tutorial.png

vignettes/figures/59_tutorial.png

vignettes/figures/ambystoma_tigrinum_animatedMapNTB.gif

vignettes/figures/ntbox.png

vignettes/figures/ntbox_01_appsettings.png

vignettes/figures/ntbox_01_appsettings_01.png

vignettes/figures/ntbox_01_appsettings_01b.png

vignettes/figures/ntbox_01_appsettings_02.png

vignettes/figures/ntbox_01_appsettings_03.png

vignettes/figures/ntbox_01_dynamic.png

vignettes/figures/ntbox_02_dynamicpol_01.png

vignettes/figures/ntbox_02_dynamicpol_02.png

vignettes/figures/ntbox_02_dynamicpol_03.png

vignettes/figures/ntbox_02_gbifvis.png

vignettes/figures/ntbox_02_userdata.png

vignettes/figures/ntbox_03_extract.png

vignettes/figures/ntbox_03_nvisual.png

vignettes/figures/ntbox_03_workflow_G.png

vignettes/figures/ntbox_04_corM.png

vignettes/figures/ntbox_04_corgram.png

vignettes/figures/ntbox_04_ncors.png

vignettes/figures/ntbox_05_ncluster.png

vignettes/figures/ntbox_05_ncluster_2.png

vignettes/figures/ntbox_06_Ellips.png

vignettes/figures/ntbox_06_Gproj.png

vignettes/figures/ntbox_06_bioclim.png

vignettes/figures/ntbox_06_nicheM.png

vignettes/figures/ntbox_07_bin.png

vignettes/figures/ntbox_07_binmethods.png

vignettes/figures/ntbox_07_binomial.png

vignettes/figures/ntbox_07_binomialRes.png

vignettes/figures/ntbox_07_confmat.png

vignettes/figures/ntbox_07_confmat_bin.png

vignettes/figures/ntbox_07_confumat_res.png

vignettes/figures/ntbox_07_percentil_res.png

vignettes/figures/ntbox_07_percentil_selec.png

vignettes/figures/ntbox_07_proc.png

vignettes/figures/ntbox_07_proc2.png

vignettes/figures/ntbox_07_userth.png

vignettes/figures/ntbox_07_userthR.png

vignettes/figures/ntbox_08_exdet1.png

vignettes/figures/ntbox_08_exdet2.png

vignettes/figures/ntbox_08_exdet3.png

vignettes/figures/ntbox_08_extrapol.png

vignettes/figures/ntbox_08_mess.png

vignettes/figures/ntbox_08_mess1.png

vignettes/figures/ntbox_08_mop.png

vignettes/figures/ntbox_08_mop0.png

vignettes/figures/ntbox_08_mop1.png

vignettes/figures/ntbox_08_mop2.png

vignettes/figures/ntbox_08_mop3.png

vignettes/figures/ntbox_08_mop4.png

vignettes/figures/ntbox_09_cropMask1.png

vignettes/figures/ntbox_09_cropmask2.png

vignettes/figures/ntbox_09_cropmask3.png

vignettes/figures/ntbox_09_export.png

vignettes/figures/ntbox_09_export2.png

vignettes/figures/ntbox_09_export3.png

vignettes/figures/ntbox_09_export4.png

vignettes/figures/ntbox_09_pca1.png

vignettes/figures/ntbox_09_pca_r1.png

vignettes/figures/ntbox_09_pca_r2.png

vignettes/figures/ntbox_10_enm.png

vignettes/figures/ntbox_10_enm_eval.png

vignettes/figures/ntbox_10_env_data.png

vignettes/figures/ntbox_10_gdata.png

vignettes/figures/ntbox_10_workflow_sv.png

vignettes/figures/ntbox_cropmask2.png

vignettes/figures/ntbox_gui.png

vignettes/figures/ntbox_pca_02.png

vignettes/figures/ntbox_pcs_03.png

vignettes/figures/ntbx_02_gbif.png

vignettes/gui_reference.Rmd

vignettes/library.bib

luismurao/ntbox documentation built on Nov. 22, 2024, 4 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

luismurao/ntbox
From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

Files in luismurao/ntbox
From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

R Package Documentation

Browse R Packages

We want your feedback!

luismurao/ntbox From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

Files in luismurao/ntbox From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

R Package Documentation

Browse R Packages

We want your feedback!

luismurao/ntbox
From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment

Files in luismurao/ntbox
From Getting Biodiversity Data to Evaluating Species Distribution Models in a Friendly GUI Environment