load_thymus_profiling_data: Load digital gene expression matrices from Maehrlab dropbox.

In maehrlab/thymusatlastools: Tools for analysis of single-cell transcriptomic data

Description

Load digital gene expression matrices from Maehrlab dropbox.

Usage

load_thymus_profiling_data(sample_ids = "all", test_mode = F,
  convert_all_to_mouse = NULL, lincRNA = F)

Arguments

sample_ids	Sample IDs to include.
test_mode	If true, return teensy little datasets with 50 cells and 200 genes.
convert_all_to_mouse	Deprecated.
lincRNA	Deprecated.

Details

There is one array for every sample ID you pass in. Each array has one column per gene and one row per cell. The column names are sample id's concatenated onto cell barcodes, separated by the infix '"|"'. This allows sample ID's to contain underscores without confusing Seurat when it goes to fetch the sample ID for 'orig.ident'.

maehrlab/thymusatlastools documentation built on May 28, 2019, 2:32 a.m.