tsne_colored: Save plots from 'custom_feature_plot'.
In maehrlab/thymusatlastools: Tools for analysis of single-cell transcriptomic data

Save plots from 'custom_feature_plot'.

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tsne_colored(dge, results_path, colour = NULL, fig_name = NULL,
  axes = c("tSNE_1", "tSNE_2"), axes_description = "TSNE", alpha = 1,
  height = 7, width = NA, types = c("PDF", "PDF_no_leg"), ...)

`dge`	Seurat object
`results_path`	Where to save files.
`colour`	A gene or type of metadata. Numeric zeroes plotted if '!is.element( colour, AvailableData( dge ) )'.
`fig_name`	Figure gets named <fig_name>.pdf or <fig_name>.png or similar. If you put a name ending in ".png" or ".pdf", the extension is stripped off.
`axes`	Character vector of length 2. Name of numeric variables available from 'FetchData'.
`axes_description`	Character. Used in file paths, so no spaces please.
`alpha`	Numeric of length 1 between 0 and 1. Point transparency.
`height`	Passed to ggsave.
`width`	Passed to ggsave, but when you ask for a legend, it gets stretched a bit to make up for lost horizontal space.
`types`	Atomic character vector; can be longer than 1 element. If contains "PDF", you get a PDF back. If "PDF_no_leg", you get a PDF with no legend. If "PNG_PDF_split", you get back the points and bare axes in a PNG, plus text-containing elements in a PDF with no points. By default, does all three. Matching is not case sensitive.
`...`	Additional arguments passed to 'custom_feature_plot'.