mar-esther23/rgriffin: Gene Regulatory Interaction Formulator For Inquiring Networks

The rgriffin package is an R connector to griffin ( Gene Regulatory Interaction Formulator For Inquiring Networks (griffin) is a java library for inference and analysis of Boolean Network models. Griffin takes as inputs biologically meaningful constraints and turns them into a symbolic representation. Using a SAT engine, griffin explores the Boolean Network search space, finding all satisfying assignments that are compatible with the specified constraints. The rgriffin package includes a number of functions to interact with the BoolNet package. See the Jupyter Tutorials for more examples.

Getting started

Package details

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Installation Install the latest version of this package by entering the following in R:
mar-esther23/rgriffin documentation built on May 9, 2019, 7:35 p.m.