mar-esther23/rgriffin: Gene Regulatory Interaction Formulator For Inquiring Networks

The rgriffin package is an R connector to griffin (http://turing.iimas.unam.mx/griffin/). Gene Regulatory Interaction Formulator For Inquiring Networks (griffin) is a java library for inference and analysis of Boolean Network models. Griffin takes as inputs biologically meaningful constraints and turns them into a symbolic representation. Using a SAT engine, griffin explores the Boolean Network search space, finding all satisfying assignments that are compatible with the specified constraints. The rgriffin package includes a number of functions to interact with the BoolNet package. See the Jupyter Tutorials for more examples.

Getting started

Package details

Maintainer
LicenseMIT
Version0.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("mar-esther23/rgriffin")
mar-esther23/rgriffin documentation built on May 9, 2019, 7:35 p.m.