addGqueryProhibitedAttractors: Add prohibited attractors to a Griffin query.

In mar-esther23/rgriffin: Gene Regulatory Interaction Formulator For Inquiring Networks

Description

Add a set of prohibited steady-state attractors to a Griffin query. The function takes a dataframe with the prohibited attractors where wach row corresponds to a prohibited steady state and each column corresponds to a node of the network The valid values are: 1: active 0: inactive *: non-determined

Usage

addGqueryProhibitedAttractors(j.query, df.prohibited.attr)

Arguments

j.query	Griffin query
df.prohibited.attr	dataframe with valid prohibited attractors

Value

query java query to run Griffin

Examples

attr.prohibited = data.frame(a=c('*'), b=c(1), c=c(1),
                  stringsAsFactors = F )
q = addGqueryProhibitedAttractors(q, attr.prohibited)

mar-esther23/rgriffin documentation built on May 29, 2021, 10:03 p.m.