addGqueryAttractors: Add target attractors to a Griffin query.

In mar-esther23/rgriffin: Gene Regulatory Interaction Formulator For Inquiring Networks

Description

Add a dataframe with attractors to a Griffin query. The function takes a dataframe with the attractors where the first column corresponds to the attractor number and the second to the state, so that cyclic attractors can have multiple rows. the rest of the columns corresponds to the nodes of the network The valid values are: 1: active 0: inactive *: non-determined

Usage

addGqueryAttractors(j.query, df.attr)

Arguments

j.query	Griffin query
df.attr	dataframe with attractors

Value

query java query to run Griffin

Examples

data("cellcycle")
topology <- getNetTopology(cellcycle)
cc.attr <- getAttractors(cellcycle)
cc.attr <- attractorToDataframe(cc.attr)

q <- createGqueryGraph(topology, cellcycle$genes)
q <- addGqueryAttractors(q, cc.attr)
print(q)

mar-esther23/rgriffin documentation built on May 29, 2021, 10:03 p.m.