addGquerySteadyStates: Add target steady-state attractors to a Griffin query.

In mar-esther23/rgriffin: Gene Regulatory Interaction Formulator For Inquiring Networks

Description

Add a set of target steady-state attractors to a Griffin query. The function takes a dataframe with the attractors where each row corresponds to a steady state and each column corresponds to a node of the network The valid values are: 1: active 0: inactive *: non-determined

Usage

addGquerySteadyStates(j.query, df.attr)

Arguments

j.query	Griffin query
df.attr	dataframe with steady-state attractors

Value

query java query to run Griffin

Examples

attr = data.frame(a=c(0,'*',0,1), 
                  b=c(0,1,0,'*'), 
                  c=c(0,0,1,0),
                  stringsAsFactors = F )
q = addGquerySteadyStates(q, attr)

mar-esther23/rgriffin documentation built on May 29, 2021, 10:03 p.m.