addGquerySteadyStates: Add target steady-state attractors to a Griffin query.

Description Usage Arguments Value Examples

View source: R/createQueryAttractors.R

Description

Add a set of target steady-state attractors to a Griffin query. The function takes a dataframe with the attractors where each row corresponds to a steady state and each column corresponds to a node of the network The valid values are: 1: active 0: inactive *: non-determined

Usage

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addGquerySteadyStates(j.query, df.attr)

Arguments

j.query

Griffin query

df.attr

dataframe with steady-state attractors

Value

query java query to run Griffin

Examples

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attr = data.frame(a=c(0,'*',0,1), 
                  b=c(0,1,0,'*'), 
                  c=c(0,0,1,0),
                  stringsAsFactors = F )
q = addGquerySteadyStates(q, attr)

mar-esther23/rgriffin documentation built on Nov. 21, 2020, 7:42 p.m.