dataframeToAttractor: Convert a data frame with nodes displayed in Boolean format...
In mar-esther23/rgriffin: Gene Regulatory Interaction Formulator For Inquiring Networks
Description
Usage
Arguments
Value
Examples
View source: R/griffinToBoolnet.R
Description
Convert a data frame with nodes displayed in Boolean format to a BoolNet attractor. First column is the attractor number, second is the number of state inside the attractor, the rest of the columns correspond to each node.
Usage
1
dataframeToAttractor(df, node.names, fixed.genes)
Arguments
df
dataframe, seeattractor2dataframe each column corresponds to the number of attractor, state, or node
node.names
nodes of network
fixed.genes
fixedGenes of network
Value
attr BoolNet attractor object
Examples
1
2
3
4
> data("cellcycle")
> attr <- getAttractors(cellcycle)
> attr.df <- attractorToDataframe(attr)
> print(dataframe2attractor(attr.df, cellcycle$genes))
mar-esther23/rgriffin documentation built on May 29, 2021, 10:03 p.m.
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Description Usage Arguments Value Examples
View source: R/griffinToBoolnet.R
Description
Convert a data frame with nodes displayed in Boolean format to a BoolNet attractor. First column is the attractor number, second is the number of state inside the attractor, the rest of the columns correspond to each node.
Usage
1 | dataframeToAttractor(df, node.names, fixed.genes)
|
Arguments
df |
dataframe, see |
node.names |
nodes of network |
fixed.genes |
fixedGenes of network |
Value
attr BoolNet attractor object
Examples
1 2 3 4 | > data("cellcycle")
> attr <- getAttractors(cellcycle)
> attr.df <- attractorToDataframe(attr)
> print(dataframe2attractor(attr.df, cellcycle$genes))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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