addGqueryAttractors | Add target attractors to a Griffin query. |
addGqueryCycle | Add target cycle to a Griffin query. |
addGqueryMutant | Add mutant with attractors to a Griffin query. |
addGqueryProhibitedAttractors | Add prohibited attractors to a Griffin query. |
addGquerySteadyStates | Add target steady-state attractors to a Griffin query. |
addGqueryTransition | Add a transition between two states to a Griffin query. |
addGqueryTrapspace | Add a trapspace to a Griffin query. |
attractorToDataframe | Convert a BoolNet attractor to dataframe. |
boolnetModelIterator | Iterates over griffin controller to return string networks |
createGqueryGraph | Create a Griffin query. |
dataframeToAttractor | Convert a data frame with nodes displayed in Boolean format... |
dot-onLoad | Initialize jvm |
getBasins | Obtain the attractors and basins from a BoolNet network using... |
getInteractionSign | Determine the sign of the interaction between two elements of... |
getNetTopology | Returns the topology with signs of a network |
griffinModelIterator | Iterates over griffin controller to return string networks |
initGriffin | Initialize the Java Virtual Machine (JVM) and create a... |
int2binState | Convert integer to binary state vector with node names. ' |
print.jobjRef | print query |
runGquery | Run a Griffin query from an interaction graph. |
stringToBoolnet | Create a BoolNet net from a string |
validateStates | Check if the states are of the correct size, order,... |
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