Man pages for mar-esther23/rgriffin
Gene Regulatory Interaction Formulator For Inquiring Networks
| addGqueryAttractors | Add target attractors to a Griffin query. |
| addGqueryCycle | Add target cycle to a Griffin query. |
| addGqueryMutant | Add mutant with attractors to a Griffin query. |
| addGqueryProhibitedAttractors | Add prohibited attractors to a Griffin query. |
| addGquerySteadyStates | Add target steady-state attractors to a Griffin query. |
| addGqueryTransition | Add a transition between two states to a Griffin query. |
| addGqueryTrapspace | Add a trapspace to a Griffin query. |
| attractorToDataframe | Convert a BoolNet attractor to dataframe. |
| boolnetModelIterator | Iterates over griffin controller to return string networks |
| createGqueryGraph | Create a Griffin query. |
| dataframeToAttractor | Convert a data frame with nodes displayed in Boolean format... |
| dot-onLoad | Initialize jvm |
| getBasins | Obtain the attractors and basins from a BoolNet network using... |
| getInteractionSign | Determine the sign of the interaction between two elements of... |
| getNetTopology | Returns the topology with signs of a network |
| griffinModelIterator | Iterates over griffin controller to return string networks |
| initGriffin | Initialize the Java Virtual Machine (JVM) and create a... |
| int2binState | Convert integer to binary state vector with node names. ' |
| print.jobjRef | print query |
| runGquery | Run a Griffin query from an interaction graph. |
| stringToBoolnet | Create a BoolNet net from a string |
| validateStates | Check if the states are of the correct size, order,... |
