API for masato-ogishi/Repitope
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling

Global functions
CPP_AACPMatrix Man page Source code
CPP_FragmentLibrary Man page Source code
ContactPotentialProfiling_AACPMatrix Man page
ContactPotentialProfiling_FragmentLibrary Man page
DataPreparation_EpitopeDataset Man page
DataPreparation_NetMHC Man page
DataPreparation_TCR_FastQDump Man page
DataPreparation_TCR_MiXCR Man page
Dataset_EpitopeDataset Man page
Dataset_TCRDatasets Man page
Dataset_TCRPeptidePairDataset Man page
EpitopePrioritization Man page Source code
Epitope_Import Man page Source code
FastQDump_Script Man page Source code
Feature_Computation Man page
Features Man page Source code
Features_CPP Man page Source code
Features_CorFilter Man page Source code
Features_ExtractFeatures Man page Source code
Features_ExtractParameters Man page Source code
Features_FeatureSelect Man page Source code
Features_IO Man page
Features_Importance Man page Source code
Features_Importance_Reduce Man page Source code
Features_MinimumFeatures Man page Source code
Features_PeptDesc Man page Source code
Features_Preprocess Man page Source code
Features_Preprocessing Man page
Features_sCPP Man page Source code
Immunogenicity Man page
Immunogenicity_Predict Man page Source code
Immunogenicity_Score Man page Source code
Immunogenicity_Score_Cluster Man page Source code
Immunogenicity_SummarizeInternalScores Man page Source code
Immunogenicity_TrainModels Man page Source code
InSilicoMutagenesis Man page Source code
MHCII_Human Man page
MHCII_Human_MinimumFeatureSet Man page
MHCII_Primates Man page
MHCII_Rodents Man page
MHCI_Human Man page
MHCI_Human_MinimumFeatureSet Man page
MHCI_Primates Man page
MHCI_Rodents Man page
MiXCR_CombineClonotypes Man page Source code
MiXCR_Script Man page Source code
NeighborNetwork Man page
NeighborNetwork_Clustering Man page
NetMHC_Import Man page Source code
NetMHC_PeptideExport Man page Source code
NetMHC_Script Man page Source code
Repitope Man page
TCRPeptidePairDataset Man page
TCRSet_Public Man page
Utility_Classifier Man page
Utility_DF Man page
Utility_FastUnique Man page
Utility_ParCor Man page
Utility_Sequence Man page
Utility_VennDiagram Man page
calibPlot Man page Source code
classifierDiagnosticPlots Man page Source code
compressedToDummyDF Man page
compressedToLongFormat Man page
compute_auc Man page Source code
contactFootprintDensityPlot Man page Source code
cumGainPlot Man page Source code
fastUnique Man page Source code
inverseColOrderDFList Man page Source code
multivariateRegressionPlot Man page Source code
multivariateRegressionPrediction Man page Source code
mutate_if_byrow Man page Source code
neighborNetwork Man page Source code
neighborNetwork_Cluster Man page Source code
neighborNetwork_Cluster_Batch Man page Source code
neighborNetwork_Cluster_FeatureDF Man page Source code
neighborNetwork_ConnectedSubGraph Man page Source code
neighborNetwork_ConnectedSubGraphDF Man page Source code
package-Repitope Man page
parCor Man page Source code
prcPlot Man page Source code
readFeatureDFList Man page Source code
rocPlot Man page Source code
saveFeatureDFList Man page Source code
sequenceFilter Man page Source code
sequenceSlidingWindow Man page Source code
sortByMedian Man page Source code
univariateCorrelationAnalysis Man page Source code
univariateCorrelationPlot Man page Source code
univariateFeatureSelect Man page Source code
vennDiagram Man page Source code
masato-ogishi/Repitope documentation built on Feb. 14, 2023, 5:47 a.m.