API for masato-ogishi/Repitope
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling

Global functions
CPP_AACPMatrix Man page Source code
CPP_FragmentLibrary Man page Source code
ContactPotentialProfiling_AACPMatrix Man page
ContactPotentialProfiling_FragmentLibrary Man page
DataPreparation_EpitopeDataset Man page Man page Man page
DataPreparation_NetMHC Man page Man page Man page
DataPreparation_TCR_MiXCR Man page Man page
Dataset_EpitopeDataset Man page Man page Man page Man page Man page Man page
Dataset_TCRDatasets Man page
Epitope_Import Man page Source code
FastQDump_Script Man page Source code
Features Man page Source code
Features_CPP Man page Source code
Features_CorFilter Man page Source code
Features_ExtractFeatures Man page Man page Source code
Features_ExtractParameters Man page Source code
Features_FeatureSelect Man page Source code
Features_IO Man page Man page
Features_Importance Man page Man page Source code
Features_Importance_Reduce Man page Source code
Features_MinimumFeatures Man page Source code
Features_PeptDesc Man page Source code
Features_Preprocess Man page Source code
Features_Preprocessing Man page Man page Man page Man page
ImmuneTransition Man page Man page Man page Man page
ImmuneTransition_Predict Man page Source code
ImmuneTransition_Score Man page Source code
ImmuneTransition_SummarizeInternalScores Man page Source code
ImmuneTransition_TrainModels Man page Source code
Immunogenicity Man page Man page Man page Man page Man page
Immunogenicity_Predict Man page Source code
Immunogenicity_Score Man page Source code
Immunogenicity_Score_Cluster Man page Source code
Immunogenicity_SummarizeInternalScores Man page Source code
Immunogenicity_TrainModels Man page Source code
InSilicoMutagenesis Man page Source code
MHCII_Human Man page
MHCII_Primates Man page
MHCII_Rodents Man page
MHCI_Human Man page
MHCI_Primates Man page
MHCI_Rodents Man page
MiXCR_CombineClonotypes Man page Source code
MiXCR_Script Man page Source code
NeighborNetwork Man page Man page Man page
NeighborNetwork_Clustering Man page Man page Man page
NetMHC_Import Man page Source code
NetMHC_PeptideExport Man page Source code
NetMHC_Script Man page Source code
Repitope Man page
Repitope-package Man page
TCRSet_Public Man page
Utility_Classifier Man page Man page Man page Man page Man page
Utility_DF Man page Man page
Utility_ParCor Man page
Utility_Sequence Man page Man page Man page
Utility_VennDiagram Man page
calibPlot Man page Source code
classifierDiagnosticPlots Man page Source code
compressedToDummyDF Man page Source code
compressedToLongFormat Man page Source code
cumGainPlot Man page Source code
distMat_Indel Man page Source code
distMat_Sbst Man page Source code
inverseColOrderDFList Man page Source code
mutate_if_byrow Man page Source code
neighborNetwork Man page Source code
neighborNetwork_Cluster Man page Source code
neighborNetwork_Cluster_Batch Man page Source code
neighborNetwork_ConnectedSubGraph Man page Source code
package-Repitope Man page
parCor Man page Source code
prcPlot Man page Source code
readFeatureDFList Man page Source code
rocPlot Man page Source code
saveFeatureDFList Man page Source code
sequenceFilter Man page Source code
sequenceSlidingWindow Man page Source code
sortByMedian Man page Source code
vennDiagram Man page Source code
masato-ogishi/Repitope documentation built on July 3, 2018, 10:02 a.m.