Files in masato-ogishi/Repitope
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ContactPotentialProfiling_AACPMatrix.R
R/ContactPotentialProfiling_FragmentLibrary.R
R/DataPreparation_EpitopeDataset.R
R/DataPreparation_NetMHC.R
R/DataPreparation_TCR_FastQDump.R
R/DataPreparation_TCR_MiXCR.R
R/Dataset_EpitopeDataset.R
R/Dataset_FeatureSet.R
R/Dataset_TCRDatasets.R
R/Dataset_TCRPeptidePairDataset.R
R/EpitopePrioritization.R
R/Features.R
R/Features_ExtractFeatures.R
R/Features_IO.R
R/Features_Importance.R
R/Features_MinimumFeatures.R
R/Features_Preprocessing.R
R/Immunogenicity.R
R/NeighborNetwork.R
R/NeighborNetwork_Clustering.R
R/Repitope.R
R/SingleTCRAnalysis.R
R/Utility_Classifier.R
R/Utility_DF.R
R/Utility_FastUnique.R
R/Utility_ParCor.R
R/Utility_Sequence.R
R/Utility_VennDiagram.R
README.md
Repitope.Rproj
data/MHCII_Human.rda
data/MHCII_Human_MinimumFeatureSet.rda
data/MHCII_Primates.rda
data/MHCII_Rodents.rda
data/MHCI_Human.rda
data/MHCI_Human_MinimumFeatureSet.rda
data/MHCI_Primates.rda
data/MHCI_Rodents.rda
data/TCRPeptidePairDataset.rda
data/TCRSet_Public.rda
inst/AACPMatrix.csv
inst/Calis1.csv
inst/Calis2.csv
inst/Chowell.csv
inst/EPIMHC.csv
inst/HCV.csv
inst/HIV.csv
inst/IEDB_Assay_MHCII_Human.csv.gz
inst/IEDB_Assay_MHCII_Primates.csv.gz
inst/IEDB_Assay_MHCII_Rodents.csv.gz
inst/IEDB_Assay_MHCI_Human.csv.gz
inst/IEDB_Assay_MHCI_Primates.csv.gz
inst/IEDB_Assay_MHCI_Rodents.csv.gz
inst/IEDB_ImmunogenicityEvidenceTable.csv
inst/IMMA2.csv
inst/MHCBN.csv
inst/TANTIGEN.csv
man/ContactPotentialProfiling_AACPMatrix.Rd
man/ContactPotentialProfiling_FragmentLibrary.Rd
man/DataPreparation_EpitopeDataset.Rd
man/DataPreparation_NetMHC.Rd
man/DataPreparation_TCR_FastQDump.Rd
man/DataPreparation_TCR_MiXCR.Rd
man/Dataset_EpitopeDataset.Rd
man/Dataset_TCRDatasets.Rd
man/Dataset_TCRPeptidePairDataset.Rd
man/EpitopePrioritization.Rd
man/Features.Rd
man/Features_ExtractFeatures.Rd
man/Features_IO.Rd
man/Features_Importance.Rd
man/Features_MinimumFeatures.Rd
man/Features_Preprocessing.Rd
man/Immunogenicity.Rd
man/NeighborNetwork.Rd
man/NeighborNetwork_Clustering.Rd
man/Repitope.Rd
man/SingleTCRAnalysis.Rd
man/Utility_Classifier.Rd
man/Utility_DF.Rd
man/Utility_FastUnique.Rd
man/Utility_ParCor.Rd
man/Utility_Sequence.Rd
man/Utility_VennDiagram.Rd
