Files in masato-ogishi/Repitope
Epitope immunogenicity prediction via TCR-peptide contact potential profiling

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ContactPotentialProfiling_AACPMatrix.R R/ContactPotentialProfiling_FragmentLibrary.R R/DataPreparation_EpitopeDataset.R R/DataPreparation_NetMHC.R R/DataPreparation_TCR_FastQDump.R R/DataPreparation_TCR_MiXCR.R R/Dataset_EpitopeDataset.R R/Dataset_TCRDatasets.R R/Features.R R/Features_ExtractFeatures.R R/Features_IO.R R/Features_Importance.R R/Features_MinimumFeatures.R R/Features_Preprocessing.R R/ImmuneTransition.R R/Immunogenicity.R R/InSillicoMutagenesis.R R/NeighborNetwork.R R/NeighborNetwork_Clustering.R R/Neoepitope.R R/Repitope.R R/Utility_Classifier.R R/Utility_DF.R R/Utility_ParCor.R R/Utility_Sequence.R R/Utility_VennDiagram.R README.md
Repitope.Rproj
data/MHCII_Human.rda
data/MHCII_Primates.rda
data/MHCII_Rodents.rda
data/MHCI_Human.rda
data/MHCI_Primates.rda
data/MHCI_Rodents.rda
data/TCRSet_Public.rda
inst/AACPMatrix.csv
inst/Calis1.csv
inst/Calis2.csv
inst/Chowell.csv
inst/EPIMHC.csv
inst/HCV.csv
inst/HIV.csv
inst/IEDB_Assay_MHCII_Human.csv.gz
inst/IEDB_Assay_MHCII_Primates.csv.gz
inst/IEDB_Assay_MHCII_Rodents.csv.gz
inst/IEDB_Assay_MHCI_Human.csv.gz
inst/IEDB_Assay_MHCI_Primates.csv.gz
inst/IEDB_Assay_MHCI_Rodents.csv.gz
inst/IEDB_ImmunogenicityEvidenceTable.csv
inst/IMMA2.csv
inst/MHCBN.csv
inst/TANTIGEN.csv
man/ContactPotentialProfiling_AACPMatrix.Rd man/ContactPotentialProfiling_FragmentLibrary.Rd man/DataPreparation_EpitopeDataset.Rd man/DataPreparation_NetMHC.Rd man/DataPreparation_TCR_FastQDump.Rd man/DataPreparation_TCR_MiXCR.Rd man/Dataset_EpitopeDataset.Rd man/Dataset_TCRDatasets.Rd man/Features.Rd man/Features_ExtractFeatures.Rd man/Features_IO.Rd man/Features_Importance.Rd man/Features_MinimumFeatures.Rd man/Features_Preprocessing.Rd man/ImmuneTransition.Rd man/Immunogenicity.Rd man/InSillicoMutagenesis.Rd man/NeighborNetwork.Rd man/NeighborNetwork_Clustering.Rd man/Neoepitope.Rd man/Repitope.Rd man/Utility_Classifier.Rd man/Utility_DF.Rd man/Utility_ParCor.Rd man/Utility_Sequence.Rd man/Utility_VennDiagram.Rd
masato-ogishi/Repitope documentation built on May 21, 2018, 2:06 p.m.