Utility_Sequence | R Documentation |
sequenceFilter
filters amino acid sequences so that those containing non-standard letters are excluded.
sequenceSlidingWindow
splits the input sequences in a sliding window basis with a fixed window size.
InSilicoMutagenesis
generates single-aa-substituted sequences. Currently insertions and deletions are not supported.
sequenceFilter(peptideSet, peptideLengthSet = 8:11) sequenceSlidingWindow(peptideSet, windowSize = 3) InSilicoMutagenesis( peptideSet, peptideLengthSet = 8:11, coreN = parallel::detectCores(logical = F) )
peptideSet |
A set of amino acid sequences. |
peptideLengthSet |
A set of allowed amino acid sequence lengths. Peptides not falling in this range will be discarded. |
windowSize |
A size of the sliding window. |
coreN |
The number of cores to be used for parallelization. |
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