DataPreparation_EpitopeDataset | R Documentation |
Epitope_Import
imports IEDB and other epitope files. Contradicting annotations on immunogenicity are internally resolved.
compressedToLongFormat
converts a dataframe with a compresed column in which items are concatenated with "|" into a long-format one.
compressedToDummyDF
generates dummy variable columns from a compresed column in which items are concatenated with "|".
Epitope_Import( IEDBAssayFileName = NULL, OtherFileNames = NULL, peptideLengthSet = 8:11 ) compressedToLongFormat(df, compressedColumnName) compressedToDummyDF(df, compressedColumnName)
IEDBAssayFileName |
A set of T cell assay results obtained from IEDB. |
OtherFileNames |
Other epitope source files. Must contain a "Dataset" column indicating the data source. |
peptideLengthSet |
A set of peptide lengths to be incorporated. |
df |
A dataframe/datatable of epitope dataset. |
compressedColumnName |
A string indicating the names of the compressed column to be converted into a long format. |
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