DataPreparation_TCR_FastQDump: Downloading fastQ files from NCBI Sequence Read Archive...
In masato-ogishi/Repitope: Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling
DataPreparation_TCR_FastQDump R Documentation
Downloading fastQ files from NCBI Sequence Read Archive (SRA).
Description
FastQDump_Script generates fustq-dump script.
Usage
FastQDump_Script(
accessionSet,
outDir = "C:/SRA/output",
FastQDumpPath = "C:\\SRA\\sratoolkit.2.9.2-win64\\bin\\fastq-dump.exe"
)
Arguments
accessionSet
A set of SRA Run Accession numbers.
outDir
A directory for outputs.
FastQDumpPath
A full path to fastq-dump.exe.
masato-ogishi/Repitope documentation built on Feb. 14, 2023, 5:47 a.m.
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| DataPreparation_TCR_FastQDump | R Documentation |
Downloading fastQ files from NCBI Sequence Read Archive (SRA).
Description
FastQDump_Script generates fustq-dump script.
Usage
FastQDump_Script( accessionSet, outDir = "C:/SRA/output", FastQDumpPath = "C:\\SRA\\sratoolkit.2.9.2-win64\\bin\\fastq-dump.exe" )
Arguments
accessionSet |
A set of SRA Run Accession numbers. |
outDir |
A directory for outputs. |
FastQDumpPath |
A full path to fastq-dump.exe. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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