DataPreparation_NetMHC: Utility functions for NetMHC.
In masato-ogishi/Repitope: Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling
DataPreparation_NetMHC R Documentation
Utility functions for NetMHC.
Description
To use the scripts generated by NetMHC_Script, NetMHC4.0 and NetMHCIIpan3.2 should be installed locally.
Usage
NetMHC_PeptideExport(peptideSet, outDir = "./NetMHC/", maxPeptides = NULL)
NetMHC_Script(outDir = "./NetMHC/")
NetMHC_Import(netMHCOutputFileNames, MHCType = c("MHCI", "MHCII"))
Arguments
peptideSet
A set of peptide sequences.
outDir
A path to the output directory in which peptides will be exported in FASTA format.
maxPeptides
An integer indicating the maximum number of peptides in each FASTA files. Set NULL to disable chunking.
netMHCOutputFileNames
A set of tab-delimited NetMHC result files.
MHCType
A character string. "MHCI" or "MHCII".
masato-ogishi/Repitope documentation built on Feb. 14, 2023, 5:47 a.m.
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| DataPreparation_NetMHC | R Documentation |
Utility functions for NetMHC.
Description
To use the scripts generated by NetMHC_Script, NetMHC4.0 and NetMHCIIpan3.2 should be installed locally.
Usage
NetMHC_PeptideExport(peptideSet, outDir = "./NetMHC/", maxPeptides = NULL)
NetMHC_Script(outDir = "./NetMHC/")
NetMHC_Import(netMHCOutputFileNames, MHCType = c("MHCI", "MHCII"))
Arguments
peptideSet |
A set of peptide sequences. |
outDir |
A path to the output directory in which peptides will be exported in FASTA format. |
maxPeptides |
An integer indicating the maximum number of peptides in each FASTA files. Set |
netMHCOutputFileNames |
A set of tab-delimited NetMHC result files. |
MHCType |
A character string. "MHCI" or "MHCII". |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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