Files in mccoy-lab/rhapsodi

R haploid sperm/oocyte data imputation

R/betaregmodel_20220718-data.R R/build_hmm.R R/calculate_window_size.R R/cbind_pos.R R/dataACGT-data.R R/discover_meiotic_recombination.R R/export_data.R R/fill_na.R R/find_recomb_spots.R R/get_mode.R R/impute_gamete_genotypes.R R/invert_bits.R R/phase_donor_haplotypes.R R/re_recode_gametes.R R/read_data.R R/recode_gametes.R R/reconstruct_hap.R R/record_ref_alt.R R/rhapsodi_autorun.R R/run_hmm.R R/sim01NA42-data.R R/sim_add_de_novo_mut.R R/sim_add_na_flatten.R R/sim_add_seq_error.R R/sim_add_to_na_flatten.R R/sim_assess_gam_imputation.R R/sim_assess_it.R R/sim_assess_phasing.R R/sim_assess_recomb.R R/sim_autorun.R R/sim_completeness.R R/sim_filter_generated_data.R R/sim_find_cov_from_mgr.R R/sim_find_fn.R R/sim_find_fp.R R/sim_find_mgr_from_cov.R R/sim_find_num_crossovers.R R/sim_find_num_nas.R R/sim_find_tn.R R/sim_find_tp.R R/sim_gamete_killing.R R/sim_gene_conversion.R R/sim_generate_donor_hap.R R/sim_generate_gam.R R/sim_generate_global.R R/sim_hamming_distance_ignoreNA.R R/sim_lhs.R R/sim_metrics.R R/sim_run_generative_model.R R/sim_run_generative_model_with_TD.R R/sim_ser.R R/split_with_overlap.R R/stitch_haplotypes.R R/unsmooth.R README.md data-raw/dataACGT.R data-raw/sim01NA42.R man/betaregmodel_20220718.Rd man/build_hmm.Rd man/calculate_window_size.Rd man/cbind_pos.Rd man/dataACGT.Rd man/discover_meiotic_recombination.Rd man/export_data.Rd man/fill_na.Rd man/find_recomb_spots.Rd man/get_mode.Rd man/impute_gamete_genotypes.Rd man/invert_bits.Rd man/phase_donor_haplotypes.Rd man/re_recode_gametes.Rd man/read_data.Rd man/recode_gametes.Rd man/reconstruct_hap.Rd man/record_ref_alt.Rd man/rhapsodi_autorun.Rd man/run_hmm.Rd man/sim01NA42.Rd man/sim_add_de_novo_mut.Rd man/sim_add_na_flatten.Rd man/sim_add_seq_error.Rd man/sim_add_to_na_flatten.Rd man/sim_assess_gam_imputation.Rd man/sim_assess_it.Rd man/sim_assess_phasing.Rd man/sim_assess_recomb.Rd man/sim_autorun.Rd man/sim_completeness.Rd man/sim_filter_generated_data.Rd man/sim_find_cov_from_mgr.Rd man/sim_find_fn.Rd man/sim_find_fp.Rd man/sim_find_mgr_from_cov.Rd man/sim_find_num_crossovers.Rd man/sim_find_num_nas.Rd man/sim_find_tn.Rd man/sim_find_tp.Rd man/sim_gamete_killing.Rd man/sim_gene_conversion.Rd man/sim_generate_donor_hap.Rd man/sim_generate_gam.Rd man/sim_generate_global.Rd man/sim_hamming_distance_ignoreNA.Rd man/sim_lhs.Rd man/sim_metrics.Rd man/sim_run_generative_model.Rd man/sim_run_generative_model_with_TD.Rd man/sim_ser.Rd man/split_with_overlap.Rd man/stitch_haplotypes.Rd man/unsmooth.Rd vignettes/rhapsodi.Rmd