GSEmetadata: Create sample phenotype metadata of a GEO dataset including...
In mensxmachina/BioDataome: Functions used to preprocess datasets stored in BioDataome
Description
Usage
Arguments
Value
Examples
Description
Given a GSE id this function downloads phenotype data from GEO for a specific study, discovers control samples
and returns all sample phenotype metadata
Usage
1
GSEmetadata(x, y)
Arguments
x
a GSE series ID
y
a GEO platform id (GPL)
Value
a data frame of metadata with columns: sample IDs, Class and all other GEO phenotype data found in series matrix
Examples
1
2
3
4
## Not run:
metadata<-GSEmetadata("GSE11761","GPL570")
## End(Not run)
metadata<-BioDataome:::phenos
mensxmachina/BioDataome documentation built on July 24, 2021, 1:05 p.m.
R Package Documentation
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Description Usage Arguments Value Examples
Description
Given a GSE id this function downloads phenotype data from GEO for a specific study, discovers control samples and returns all sample phenotype metadata
Usage
1 | GSEmetadata(x, y)
|
Arguments
x |
a GSE series ID |
y |
a GEO platform id (GPL) |
Value
a data frame of metadata with columns: sample IDs, Class and all other GEO phenotype data found in series matrix
Examples
1 2 3 4 | ## Not run:
metadata<-GSEmetadata("GSE11761","GPL570")
## End(Not run)
metadata<-BioDataome:::phenos
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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