Description Usage Arguments Value Examples
View source: R/preprocessGEOMethylation.R
This function utilizes minfi Package to convert data into methylation measurements. Example: Assuming there is a directory named GSE78279 in the working directory where idat files are stored and "GSM2071074_8655685078_R03C02" and "GSM2071074_8655685078_R03C02" are the file names for the idat files, then x should be:
a character array with the paths to the idat files
a matrix of dimensions: probes x samples with the normalized methylation values
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## Not run: x<-c("GSM2071074_8655685078_R03C02","GSM2071075_8655685078_R04C02") x<-file.path(getwd(),"GSE78279",x) dataNorm<-preprocessGEOMethylation(x) ## End(Not run) meth<-data
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