entrezIDtoGSE: Find all GSE ids for a given Entrez query Example: query GEO...
In mensxmachina/BioDataome: Functions used to preprocess datasets stored in BioDataome
Description
Usage
Arguments
Value
Examples
View source: R/entrezIDtoGSE.R
Description
Find all GSE ids for a given Entrez query
Example: query GEO for all Homo sapiens studies with sample size
between 200-300, measured with GPL570 and provide CEL files
Usage
1
Arguments
x
an esearch object as a result of an entrez_search query
Value
a matrix the first column of which is the GSE id and the second the entrezID
Examples
1
2
3
4
5
6
r_search <- rentrez::entrez_search(db="gds", term="Homo sapiens[ORGN]
AND CEL[SFIL] AND gpl570[ACCN] AND 200:300[Number of Samples]",
retmax =10000, use_history=TRUE)
## Not run:
entrezIDtoGSE(r_search)
## End(Not run)
mensxmachina/BioDataome documentation built on July 24, 2021, 1:05 p.m.
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Description Usage Arguments Value Examples
View source: R/entrezIDtoGSE.R
Description
Find all GSE ids for a given Entrez query Example: query GEO for all Homo sapiens studies with sample size between 200-300, measured with GPL570 and provide CEL files
Usage
1 |
Arguments
x |
an esearch object as a result of an entrez_search query |
Value
a matrix the first column of which is the GSE id and the second the entrezID
Examples
1 2 3 4 5 6 | r_search <- rentrez::entrez_search(db="gds", term="Homo sapiens[ORGN]
AND CEL[SFIL] AND gpl570[ACCN] AND 200:300[Number of Samples]",
retmax =10000, use_history=TRUE)
## Not run:
entrezIDtoGSE(r_search)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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