controlSamples: Discover control samples from phenotype data in GEO
In mensxmachina/BioDataome: Functions used to preprocess datasets stored in BioDataome
Description
Usage
Arguments
Value
Examples
View source: R/controlSamples.R
Description
This function discovers control samples from the series matrix found in GEO.
It searches for specific keywords that are often used to denote controls in specific columns of the
series matrices.
Usage
1
Arguments
d
a data frame with the contents of series matrix
Value
a data frame of GEO sample ids (i.e. GSM60555) and their class.
Examples
1
2
3
4
## Not run:
phenos<-downloadPhenotypePlatform("GSE11761","GPL570")
## End(Not run)
controls<-controlSamples(BioDataome:::phenos)
mensxmachina/BioDataome documentation built on July 24, 2021, 1:05 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/controlSamples.R
Description
This function discovers control samples from the series matrix found in GEO. It searches for specific keywords that are often used to denote controls in specific columns of the series matrices.
Usage
1 |
Arguments
d |
a data frame with the contents of series matrix |
Value
a data frame of GEO sample ids (i.e. GSM60555) and their class.
Examples
1 2 3 4 | ## Not run:
phenos<-downloadPhenotypePlatform("GSE11761","GPL570")
## End(Not run)
controls<-controlSamples(BioDataome:::phenos)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.