DedupeBasedOnNearestRef: De-duplicate 'GRangesList' entries based on distance.
In mevers/RNAModR: Functional Analysis of RNA Modifications

Description Usage Arguments Details Value Author(s)

De-duplicate GRangesList entries based on distance. See 'Details'. This is a low-level function that is being called from CollapseTxBySec.

1	DedupeBasedOnNearestRef(query, ref, showPb = FALSE)

`query`	A `GRangesList` object; the query features
`ref`	A `GRangesList` object; the reference features
`showPb`	A logical scalar; if `TRUE` show a progress bar.

For two GRangesList objects select entries from query that have an entry in ref and collapse multiple entries with the same name from query based on the minimum distance to the single entry from ref.

A GRangesList object.

Maurits Evers, maurits.evers@anu.edu.au

mevers/RNAModR documentation built on Nov. 17, 2019, 9:11 a.m.